Dear community
I'm a very newbie who touched R for the first time today.
I tried to plot with the following simple code, but the dots are horizontal lines as shown in the image, and I don't know where the problem is.
Could you tell me which codes are the problem, or what codes are missing?
read.csv("microbiome.csv", header = TRUE, row.names = 1)
x = read.csv("microbiome.csv", header = TRUE, row.names = 1)
com = x[,2:ncol(x)]
com[is.na(com)] <- 0
m_com = as.matrix(com)
library("vegan")
nmds = metaMDS(m_com, distance = "bray”)
Can you explain why it shouldnt be like this?, what should it be like ?
Thank you for your prompt reply!
I wanted to analyze seasonal variety of microbiome and expected to be sparsely plotted...
Have you looked at your data to see what numbers are in there ?
もちろんです!
ですが、たった今、なぜこのコードがうまくいかなかったかわかりました。
brayの右のダブルクオーテーションが半角でなく、全角になっておりました。
そのため、R側はまだコードを入力するものと認識し、一向に進まないのだとわかりました。
初心者が些細なことでご迷惑をおかけしました。
最後まで真摯に返信してくださってありがとうございました。
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