Dear all,
When I deploy my shiny app, I am receiving this error "pandoc document conversion failed with error 99". The shiny app analyzes uploaded or example datasets and the user can download the report. I am receiving this error when I click on the Download report which is generated by RMarkdown button. I am attaching the RMarkdown document. Thanks.
---
title: "ROC Analysis Report"
output:
html_document:
css: styles.css
toc: true
toc_float: true
number_sections: false
theme: lumen
highlight: textmate
class: 'center'
params:
roc_plot: NA
roc_table: NA
chatgpt_interpretation: NA
chatgpt_interpretationPL: NA
sales_text: NA
cl_dist_plot: NA
cht_int_cls: NA
pred_dist_plot: NA
cht_pred_cls: NA
combined_placeholder: NA
chatgpt_int: NA
int_text: NA
---
```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = FALSE)
library(ggplot2)
library(grid)
library(knitr)
library(kableExtra)
```
## 1. INTRODUCTION
```{r}
params$chatgpt_int
```
## 2.RESULTS
```{r}
params$sales_text
```
Note that the after running scispace API, we will enrich this Introduction part.
### Data quality checking
```{r dist-plot, fig.cap="Figure 1: Distribution of biomarker.", echo=FALSE, warning=FALSE, message=FALSE}
# The `params` object is available in the document.
plot(params$pred_dist_plot)
```
```{r}
# The `params` object is available in the document.
params$cht_pred_cls
```
```{r, fig.cap="Figure 2: Class distributions of the output.", warning=FALSE, message=FALSE,warning=FALSE, message=FALSE}
# The `params` object is available in the document.
plot(params$cl_dist_plot)
```
```{r}
# The `params` object is available in the document.
params$cht_int_cls
```
### ROC plot
```{r, fig.cap="Figure 3: ROC plot of the analysis.", warning=FALSE, message=FALSE,warning=FALSE, message=FALSE}
# The `params` object is available in the document.
plot(params$roc_plot)
```
```{r}
# The `params` object is available in the document.
params$chatgpt_interpretationPL
```
### Performance measures
```{r}
knitr::kable(params$roc_table, caption = "Table 1: Performance measures of the ROC analysis.", format = "html") %>%
kable_styling()
```
```{r}
# The `params` object is available in the document.
params$chatgpt_interpretation
```
## 3. CONCLUSIONs
```{r}
params$combined_placeholder
```