I am trying to deploy a shinyapp but getting the following error:
> deployApp()
Preparing to deploy application...
Update application currently deployed at
https://komalrathi.shinyapps.io/medulloclassifiershinyapp/? [Y/n] Y
DONE
Uploading bundle for application: 1380990...DONE
Deploying bundle: 2535955 for application: 1380990 ...
Waiting for task: 661489247
building: Parsing manifest
################################ Begin Task Log ################################
################################# End Task Log #################################
Error: Unhandled Exception: Child Task 661489248 failed: Error parsing manifest: Unable to determine package source for Bioconductor package graph: Repository must be specified
In addition: Warning messages:
1: invalid uid value replaced by that for user 'nobody'
2: invalid gid value replaced by that for user 'nobody'
This is my sessionInfo:
> sessionInfo()
R version 3.6.1 (2019-07-05)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS High Sierra 10.13.6
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] rsconnect_0.8.15
loaded via a namespace (and not attached):
[1] BiocManager_1.30.9 compiler_3.6.1 tools_3.6.1 curl_4.1 yaml_2.2.0
[6] jsonlite_1.6 packrat_0.5.0 openssl_1.4.1 askpass_1.1
Here is the minimal app.R code to reproduce the error:
library(shiny)
library(shinydashboard)
library(medulloPackage)
ui <- dashboardPage(
dashboardHeader(title = "Classifier"),
dashboardSidebar(
),
dashboardBody(
)
)
server <- function(input, output) {
}
shinyApp(ui, server)
Before running, you will have to first install medulloPackage
using the following:
devtools::install_github("d3b-center/medullo-classifier-package")
The error is coming when I use this package so not sure how to handle it.