The code is available on shinyapps.io. It runs locally on a Linux machine.
Log:
> shiny.path
[1] "/home/zij/ShinyWaters"
> my.lib.path <- NULL
> # Two options are to use shinyapps.io https://www.shinyapps.io/admin/#/application/492027 (initially register using setAccountInfo)
# Regardless use rsconnec> # or Rstudio Connect (register using connectUser)
> # Regardless use rsconnect, works
> rsconnect::setAccountInfo(name='yettas', token='61F350129E36963CECC600B7D1CE1CE0', secret='LGs49xq5ErrBWr9C27w7hGG/Qx5IW/XcQSJjip5Q')
> rsconnect::configureApp(account='yettas', appName="waters", size("large"))
No configuration changes to deploy> rsconnect::deployApp(appDir=shiny.path, upload=TRUE, account='yettas', appName="waters", logLevel='verbose', forceUpdate=TRUE)
----- Deployment log started at 2019-05-02 11:46:52 -----
Deploy command:
rsconnect::deployApp(appDir = shiny.path, upload = TRUE, account = "yettas", appName = "waters", logLevel = "verbose", forceUpdate = TRUE)
Session information:
R version 3.5.2 (2018-12-20)
Platform: x86_64-redhat-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)
Matrix products: default
BLAS/LAPACK: /usr/lib64/R/lib/libRblas.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] shinyWidgets_0.4.8 ggplot2_3.1.1 shinydashboard_0.7.1
[4] data.table_1.12.2 shiny_1.3.2
loaded via a namespace (and not attached):
[1] Rcpp_1.0.1 compiler_3.5.2 pillar_1.3.1 later_0.8.0
[5] plyr_1.8.4 bitops_1.0-6 tools_3.5.2 digest_0.6.18
[9] jsonlite_1.6 tibble_2.1.1 gtable_0.3.0 pkgconfig_2.0.2
[13] rlang_0.3.4 crosstalk_1.0.0 yaml_2.2.0 withr_2.1.2
[17] dplyr_0.8.0.1 askpass_1.1 htmlwidgets_1.3 grid_3.5.2
[21] DT_0.5 tidyselect_0.2.5 glue_1.3.1 R6_2.2.2
[25] purrr_0.3.2 magrittr_1.5 scales_1.0.0 promises_1.0.1
[29] htmltools_0.3.6 rsconnect_0.8.13 assertthat_0.2.1 mime_0.6
[33] xtable_1.8-3 colorspace_1.4-1 httpuv_1.5.1 labeling_0.3
[37] RCurl_1.95-4.12 openssl_1.3 lazyeval_0.2.2 munsell_0.5.0
[41] crayon_1.3.4 Cairo_1.5-10
Cookies:
[1] path name value secure expires
<0 rows> (or 0-length row.names)
GET /v1/applications/779726 194ms
----- Bundle upload started at 2019-05-02 11:46:52 -----
[2019-05-02 11:46:52] Inferring App mode and parameters
[2019-05-02 11:46:52] Bundling app dir
[2019-05-02 11:46:52] Generate manifest.json
[2019-05-02 11:46:56] Writing Rmd index if necessary
[2019-05-02 11:46:56] Compressing the bundle
POST /v1/bundles 213ms
[2019-05-02 11:46:57] Starting upload now
PUT /bundles/application-779726/6edc13ae30e34d00bfc6a80a33a725b9.tar.gz?AWSAccessKeyId=ASIA54P7SCTKRAYELN72&x-amz-acl=bucket-owner-full-control&Expires=1556815617&content-md5=i8pdqHy9e9kbZ%2FnKB5hoFQ%3D%3D&x-amz-security-token=AgoJb3JpZ2luX2VjEL7%2F%2F%2F%2F%2F%2F%2F%2F%2F%2FwEaCXVzLWVhc3QtMSJIMEYCIQC7zwXhQPAQtRErdLbMgI5MV4DXLDQ6WMMeMgsHcD6LxwIhAOcZZcMgjyWFmm19Oq1%2BtTpkqWZ3XCkYUkt%2BbWmDfb6FKuMDCKf%2F%2F%2F%2F%2F%2F%2F%2F%2F%2FwEQABoMOTU0NTU1NTY5MzY1IgzQore1OKA0cukqvV0qtwP6RiEimNVDv1KI6pdPpA0NfEyj3LcsLm0xX6R61JhnuehDYjMbQzIQd67rtZn82nVvYaA9BgfYHRE%2Bxu%2B9x65J7Ql%2BnJGpLkCjTqdeLCOS2k%2FCKLUFACgDesSUbOI5NgwznWOH6c5n64AlgG38Nn047bnTlFKP5ovj33VUIQKd6KtP7w%2FnkorD%2F0%2BVCv8qleLKq7yV%2F%2FMKNEwNCSW808lVQM8NEsUhzBuJAm1Y5YkdkDecun%2BYjWT5Uec%2BGa8GVCo7rP64wQrI6FUmytSZL5jiIq78PYM9iZPerjYWe7koSdTkHcmQUhGZpqxkNoVEnh5sVQXEWpcnX3UJz9T1X4l%2BLh%2BkuI%2FGXj5PbSWm9kFtjHfKUuarh6txQQ%2BMxLzZIBIEJpmB2AJ9NAjKiw5gh2%2FZ4tJd6FM4kfhBFQsgX1wt%2BI6XOkko9BojZefmZtEsk1ZpS3kBpf2W5ut41YV0PAbWi9rya6cVt5Efo1NqyrTXt9UqPXxUWqHsDsROVxAOZl94YG9gjnaI0YlcqHvA1Ub2GnK7OxqJ2Kj5t%2FX8X6OUN%2FZmoKou9qg%2F2R8c6CmqIM4%2BaLY8sU0%2BMMzsq%2BYFOrMBIsClvvfS1UYCdUDqdTG5XWtnIt57EKgCe0LgKuAcNSEpl4cNL7DhpX0JDQf9XsgPwSfbS%2FSMTLIQLH%2F0lugOyi8KX05YUnFFY26hgU5ADkj%2FnClSODjTjHKthYDQ%2BYHyhV1Pz5GC3pWuDV0UF02Wm%2BLY1NyxCa164ibZ1TQh4QhUVwrg09XBrXi2Fgbr7fSHXgW7FriFETAL1V0S0ggM%2FiEzUIt7JA8HF8UMoB2pgVes4YU%3D&Signature=mQ%2FhhhxbQdiY814ZghQducQ8OfA%3D&content-type=application%2Fx-tar 598ms
[2019-05-02 11:46:57] Upload complete
POST /v1/bundles/2055452/status 212ms
GET /v1/bundles/2055452 201ms
[2019-05-02 11:46:58] Saving deployment record for waters -
----- Server deployment started at 2019-05-02 11:46:58 -----
POST /v1/applications/779726/deploy 375ms
Waiting for task: 609983727
GET /v1/tasks/609983727 191ms
GET /v1/tasks/609983727 179ms
building: Parsing manifest
GET /v1/tasks/609983727 199ms
building: Building image: 2165768
GET /v1/tasks/609983727 168ms
GET /v1/tasks/609983727 183ms
building: Fetching packages
GET /v1/tasks/609983727 160ms
building: Installing packages
GET /v1/tasks/609983727 166ms
GET /v1/tasks/609983727 182ms
GET /v1/tasks/609983727 155ms
GET /v1/tasks/609983727 161ms
GET /v1/tasks/609983727 170ms
GET /v1/tasks/609983727 189ms
GET /v1/tasks/609983727 163ms
GET /v1/tasks/609983727 168ms
GET /v1/tasks/609983727 181ms
GET /v1/tasks/609983727 173ms
GET /v1/tasks/609983727 158ms
GET /v1/tasks/609983727 190ms
GET /v1/tasks/609983727 192ms
GET /v1/tasks/609983727 164ms
GET /v1/tasks/609983727 164ms
GET /v1/tasks/609983727 215ms
GET /v1/tasks/609983727 190ms
GET /v1/tasks/609983727 195ms
GET /v1/tasks/609983727 167ms
GET /v1/tasks/609983727 187ms
GET /v1/tasks/609983727 166ms
GET /v1/tasks/609983727 166ms
GET /v1/tasks/609983727 161ms
building: Installing files
GET /v1/tasks/609983727 166ms
GET /v1/tasks/609983727 179ms
GET /v1/tasks/609983727 166ms
building: Pushing image: 2165768
GET /v1/tasks/609983727 166ms
GET /v1/tasks/609983727 160ms
GET /v1/tasks/609983727 178ms
GET /v1/tasks/609983727 181ms
GET /v1/tasks/609983727 175ms
GET /v1/tasks/609983727 166ms
GET /v1/tasks/609983727 189ms
GET /v1/tasks/609983727 179ms
GET /v1/tasks/609983727 215ms
GET /v1/tasks/609983727 167ms
GET /v1/tasks/609983727 164ms
GET /v1/tasks/609983727 161ms
GET /v1/tasks/609983727 182ms
GET /v1/tasks/609983727 228ms
GET /v1/tasks/609983727 157ms
GET /v1/tasks/609983727 173ms
GET /v1/tasks/609983727 159ms
GET /v1/tasks/609983727 166ms
GET /v1/tasks/609983727 175ms
GET /v1/tasks/609983727 165ms
GET /v1/tasks/609983727 244ms
GET /v1/tasks/609983727 163ms
GET /v1/tasks/609983727 164ms
GET /v1/tasks/609983727 180ms
GET /v1/tasks/609983727 170ms
GET /v1/tasks/609983727 195ms
GET /v1/tasks/609983727 164ms
deploying: Starting instances
GET /v1/tasks/609983727 172ms
GET /v1/tasks/609983727 160ms
GET /v1/tasks/609983727 159ms
GET /v1/tasks/609983727 170ms
rollforward: Activating new instances
GET /v1/tasks/609983727 164ms
unstaging: Stopping old instances
GET /v1/tasks/609983727 167ms
----- Deployment log finished at 2019-05-02 11:48:15 -----
> rsconnect::showLogs(appPath=shiny.path, account='yettas', appName="waters", streaming=TRUE)
Error in value[[3L]](cond) : Failed to start log listener.
>
> rsconnect::showLogs(appPath=shiny.path, account='yettas', appName="waters2", streaming=TRUE)
Error in gzfile(file) : all connections are in use
>
Deployment error log:
2019-05-02T16:05:29.291584+00:00 shinyapps[779726]: shiny version: 1.3.2
2019-05-02T16:05:29.291584+00:00 shinyapps[779726]: httpuv version: 1.5.1
2019-05-02T16:05:29.291585+00:00 shinyapps[779726]: knitr version: NA
2019-05-02T16:05:29.291639+00:00 shinyapps[779726]: RJSONIO version: NA
2019-05-02T16:05:29.291584+00:00 shinyapps[779726]: rmarkdown version: NA
2019-05-02T16:05:29.291640+00:00 shinyapps[779726]: htmltools version: 0.3.6
2019-05-02T16:05:29.291585+00:00 shinyapps[779726]: jsonlite version: 1.6
2019-05-02T16:09:43.894733+00:00 shinyapps[779726]: jsonlite version: 1.6
2019-05-02T16:09:43.894550+00:00 shinyapps[779726]: Server version: 1.7.2-7
2019-05-02T16:09:43.895006+00:00 shinyapps[779726]: Using pandoc at /opt/connect/ext/pandoc2
2019-05-02T16:09:43.894590+00:00 shinyapps[779726]: LANG: en_US.UTF-8
2019-05-02T16:09:43.894596+00:00 shinyapps[779726]: shiny version: 1.3.2
2019-05-02T16:09:43.894615+00:00 shinyapps[779726]: httpuv version: 1.5.1
2019-05-02T16:09:43.894617+00:00 shinyapps[779726]: rmarkdown version: NA
2019-05-02T16:09:43.894723+00:00 shinyapps[779726]: knitr version: NA
2019-05-02T16:09:43.894591+00:00 shinyapps[779726]: R version: 3.5.2
2019-05-02T16:09:43.894740+00:00 shinyapps[779726]: RJSONIO version: NA
2019-05-02T16:09:43.894771+00:00 shinyapps[779726]: htmltools version: 0.3.6
2019-05-02T16:09:44.249500+00:00 shinyapps[779726]: Using jsonlite for JSON processing
2019-05-02T16:09:44.256445+00:00 shinyapps[779726]:
2019-05-02T16:09:44.256449+00:00 shinyapps[779726]: Starting R with process ID: '19'
2019-05-02T16:09:44.296886+00:00 shinyapps[779726]: Execution halted
2019-05-02T16:09:44.289583+00:00 shinyapps[779726]: [1] "Running Shiny app file Global.R in /srv/connect/apps/waters"
2019-05-02T16:09:44.289646+00:00 shinyapps[779726]: [1] "root directory identified as "
2019-05-02T16:09:44.289633+00:00 shinyapps[779726]: [1] "Initiating ShinyWaters app"
2019-05-02T16:09:44.290081+00:00 shinyapps[779726]: Warning in rep(no, length.out = length(ans)) :
2019-05-02T16:09:44.290082+00:00 shinyapps[779726]: 'x' is NULL so the result will be NULL
2019-05-02T16:09:44.296881+00:00 shinyapps[779726]: Error in value[[3L]](cond) : replacement has length zero
2019-05-02T16:09:44.296884+00:00 shinyapps[779726]: Calls: local ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
2019-05-02T16:13:02.719952+00:00 shinyapps[779726]: Server version: 1.7.2-7
2019-05-02T16:13:02.719987+00:00 shinyapps[779726]: LANG: en_US.UTF-8
2019-05-02T16:13:02.719994+00:00 shinyapps[779726]: R version: 3.5.2
2019-05-02T16:13:02.719994+00:00 shinyapps[779726]: shiny version: 1.3.2
2019-05-02T16:13:02.719995+00:00 shinyapps[779726]: rmarkdown version: NA
2019-05-02T16:13:02.719996+00:00 shinyapps[779726]: knitr version: NA
2019-05-02T16:13:02.720235+00:00 shinyapps[779726]: Using pandoc at /opt/connect/ext/pandoc2
2019-05-02T16:13:02.719997+00:00 shinyapps[779726]: htmltools version: 0.3.6
2019-05-02T16:13:02.719997+00:00 shinyapps[779726]: RJSONIO version: NA
2019-05-02T16:13:02.719995+00:00 shinyapps[779726]: httpuv version: 1.5.1
2019-05-02T16:13:02.719996+00:00 shinyapps[779726]: jsonlite version: 1.6
2019-05-02T16:13:03.070436+00:00 shinyapps[779726]: [1] "Initiating ShinyWaters app"
2019-05-02T16:13:03.077928+00:00 shinyapps[779726]: Execution halted
2019-05-02T16:13:03.033014+00:00 shinyapps[779726]: Using jsonlite for JSON processing
2019-05-02T16:13:03.071007+00:00 shinyapps[779726]: Warning in rep(no, length.out = length(ans)) :
2019-05-02T16:13:03.039716+00:00 shinyapps[779726]:
2019-05-02T16:13:03.071008+00:00 shinyapps[779726]: 'x' is NULL so the result will be NULL
2019-05-02T16:13:03.077911+00:00 shinyapps[779726]: Error in value[[3L]](cond) : replacement has length zero
2019-05-02T16:13:03.039721+00:00 shinyapps[779726]: Starting R with process ID: '19'
2019-05-02T16:13:03.070370+00:00 shinyapps[779726]: [1] "Running Shiny app file Global.R in /srv/connect/apps/waters"
2019-05-02T16:13:03.070502+00:00 shinyapps[779726]: [1] "root directory identified as "
2019-05-02T16:13:03.077926+00:00 shinyapps[779726]: Calls: local ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>