Shinyapps.io deploying failed: error building XML (3.99-0.6) during deploying

Hi Rstudio folks,
I am updating one of my existing shinyapps with quite minimal change with R 4.2.1. The app runs well locally but was not able to be deployed to shinyapps.io (using rsconnect::deployApp). I got the error message about failing to build XML. Any idea why this happened? I tried to deploy it with R 3.6.1 and a similar error occurs but with package curl. The source code of the app is here if it is useful. Thanks for the help!

The log:

> rsconnect::deployApp(appName = "Eyes-On-Apostles", account = "yunyishen")
Preparing to deploy application...
Update application currently deployed at
https://yunyishen.shinyapps.io/Eyes-on-Apostles/? [Y/n] Y
DONE
Uploading bundle for application: 6014543...DONE
Deploying bundle: 6272418 for application: 6014543 ...
Waiting for task: 1216029396
  building: Parsing manifest
  building: Building image: 7311444
  building: Installing system dependencies
  building: Fetching packages
  building: Building package: XML
################################ Begin Task Log ################################ 
[2022-09-06T05:18:05.680514413+0000] Execute script: packages/build/igraph.sh
+ set -e
+ apt-get update -qq
+ apt-get install -y libglpk-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  libamd2 libbtf1 libcamd2 libccolamd2 libcholmod3 libcolamd2 libcxsparse3
  libglpk40 libgmp-dev libgmpxx4ldbl libgraphblas3 libklu1 libldl2 libmetis5
  libmongoose2 librbio2 libspqr2 libsuitesparse-dev libsuitesparseconfig5
  libumfpack5
Suggested packages:
  libiodbc2-dev gmp-doc libgmp10-doc libmpfr-dev
The following NEW packages will be installed:
  libamd2 libbtf1 libcamd2 libccolamd2 libcholmod3 libcolamd2 libcxsparse3
  libglpk-dev libglpk40 libgmp-dev libgmpxx4ldbl libgraphblas3 libklu1 libldl2
  libmetis5 libmongoose2 librbio2 libspqr2 libsuitesparse-dev
  libsuitesparseconfig5 libumfpack5
0 upgraded, 21 newly installed, 0 to remove and 9 not upgraded.
Need to get 10.2 MB of archives.
After this operation, 128 MB of additional disk space will be used.
Get:1 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libsuitesparseconfig5 amd64 1:5.7.1+dfsg-2 [9736 B]
Get:2 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libamd2 amd64 1:5.7.1+dfsg-2 [20.0 kB]
Get:3 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libbtf1 amd64 1:5.7.1+dfsg-2 [11.3 kB]
Get:4 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libcamd2 amd64 1:5.7.1+dfsg-2 [21.7 kB]
Get:5 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libccolamd2 amd64 1:5.7.1+dfsg-2 [23.2 kB]
Get:6 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libcolamd2 amd64 1:5.7.1+dfsg-2 [17.0 kB]
Get:7 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libmetis5 amd64 5.1.0.dfsg-5 [169 kB]
Get:8 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libcholmod3 amd64 1:5.7.1+dfsg-2 [308 kB]
Get:9 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libcxsparse3 amd64 1:5.7.1+dfsg-2 [64.2 kB]
Get:10 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/universe amd64 libglpk40 amd64 4.65-2 [378 kB]
Get:11 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libgmpxx4ldbl amd64 2:6.2.0+dfsg-4 [9128 B]
Get:12 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libgmp-dev amd64 2:6.2.0+dfsg-4 [320 kB]
Get:13 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libgraphblas3 amd64 1:5.7.1+dfsg-2 [3770 kB]
Get:14 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libklu1 amd64 1:5.7.1+dfsg-2 [71.7 kB]
Get:15 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libldl2 amd64 1:5.7.1+dfsg-2 [11.0 kB]
Get:16 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libmongoose2 amd64 1:5.7.1+dfsg-2 [31.4 kB]
Get:17 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libumfpack5 amd64 1:5.7.1+dfsg-2 [229 kB]
Get:18 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 librbio2 amd64 1:5.7.1+dfsg-2 [24.5 kB]
Get:19 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libspqr2 amd64 1:5.7.1+dfsg-2 [64.8 kB]
Get:20 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libsuitesparse-dev amd64 1:5.7.1+dfsg-2 [4161 kB]
Get:21 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/universe amd64 libglpk-dev amd64 4.65-2 [445 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 10.2 MB in 0s (37.2 MB/s)
Selecting previously unselected package libsuitesparseconfig5:amd64.
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(Reading database ... 237917 files and directories currently installed.)
Preparing to unpack .../00-libsuitesparseconfig5_1%3a5.7.1+dfsg-2_amd64.deb ...
Unpacking libsuitesparseconfig5:amd64 (1:5.7.1+dfsg-2) ...
Selecting previously unselected package libamd2:amd64.
Preparing to unpack .../01-libamd2_1%3a5.7.1+dfsg-2_amd64.deb ...
Unpacking libamd2:amd64 (1:5.7.1+dfsg-2) ...
Selecting previously unselected package libbtf1:amd64.
Preparing to unpack .../02-libbtf1_1%3a5.7.1+dfsg-2_amd64.deb ...
Unpacking libbtf1:amd64 (1:5.7.1+dfsg-2) ...
Selecting previously unselected package libcamd2:amd64.
Preparing to unpack .../03-libcamd2_1%3a5.7.1+dfsg-2_amd64.deb ...
Unpacking libcamd2:amd64 (1:5.7.1+dfsg-2) ...
Selecting previously unselected package libccolamd2:amd64.
Preparing to unpack .../04-libccolamd2_1%3a5.7.1+dfsg-2_amd64.deb ...
Unpacking libccolamd2:amd64 (1:5.7.1+dfsg-2) ...
Selecting previously unselected package libcolamd2:amd64.
Preparing to unpack .../05-libcolamd2_1%3a5.7.1+dfsg-2_amd64.deb ...
Unpacking libcolamd2:amd64 (1:5.7.1+dfsg-2) ...
Selecting previously unselected package libmetis5:amd64.
Preparing to unpack .../06-libmetis5_5.1.0.dfsg-5_amd64.deb ...
Unpacking libmetis5:amd64 (5.1.0.dfsg-5) ...
Selecting previously unselected package libcholmod3:amd64.
Preparing to unpack .../07-libcholmod3_1%3a5.7.1+dfsg-2_amd64.deb ...
Unpacking libcholmod3:amd64 (1:5.7.1+dfsg-2) ...
Selecting previously unselected package libcxsparse3:amd64.
Preparing to unpack .../08-libcxsparse3_1%3a5.7.1+dfsg-2_amd64.deb ...
Unpacking libcxsparse3:amd64 (1:5.7.1+dfsg-2) ...
Selecting previously unselected package libglpk40:amd64.
Preparing to unpack .../09-libglpk40_4.65-2_amd64.deb ...
Unpacking libglpk40:amd64 (4.65-2) ...
Selecting previously unselected package libgmpxx4ldbl:amd64.
Preparing to unpack .../10-libgmpxx4ldbl_2%3a6.2.0+dfsg-4_amd64.deb ...
Unpacking libgmpxx4ldbl:amd64 (2:6.2.0+dfsg-4) ...
Selecting previously unselected package libgmp-dev:amd64.
Preparing to unpack .../11-libgmp-dev_2%3a6.2.0+dfsg-4_amd64.deb ...
Unpacking libgmp-dev:amd64 (2:6.2.0+dfsg-4) ...
Selecting previously unselected package libgraphblas3:amd64.
Preparing to unpack .../12-libgraphblas3_1%3a5.7.1+dfsg-2_amd64.deb ...
Unpacking libgraphblas3:amd64 (1:5.7.1+dfsg-2) ...
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Unpacking libklu1:amd64 (1:5.7.1+dfsg-2) ...
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Unpacking libumfpack5:amd64 (1:5.7.1+dfsg-2) ...
Selecting previously unselected package librbio2:amd64.
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Unpacking librbio2:amd64 (1:5.7.1+dfsg-2) ...
Selecting previously unselected package libspqr2:amd64.
Preparing to unpack .../18-libspqr2_1%3a5.7.1+dfsg-2_amd64.deb ...
Unpacking libspqr2:amd64 (1:5.7.1+dfsg-2) ...
Selecting previously unselected package libsuitesparse-dev:amd64.
Preparing to unpack .../19-libsuitesparse-dev_1%3a5.7.1+dfsg-2_amd64.deb ...
Unpacking libsuitesparse-dev:amd64 (1:5.7.1+dfsg-2) ...
Selecting previously unselected package libglpk-dev:amd64.
Preparing to unpack .../20-libglpk-dev_4.65-2_amd64.deb ...
Unpacking libglpk-dev:amd64 (4.65-2) ...
Setting up libgraphblas3:amd64 (1:5.7.1+dfsg-2) ...
Setting up libldl2:amd64 (1:5.7.1+dfsg-2) ...
Setting up libmetis5:amd64 (5.1.0.dfsg-5) ...
Setting up libbtf1:amd64 (1:5.7.1+dfsg-2) ...
Setting up libgmpxx4ldbl:amd64 (2:6.2.0+dfsg-4) ...
Setting up libcxsparse3:amd64 (1:5.7.1+dfsg-2) ...
Setting up libsuitesparseconfig5:amd64 (1:5.7.1+dfsg-2) ...
Setting up librbio2:amd64 (1:5.7.1+dfsg-2) ...
Setting up libamd2:amd64 (1:5.7.1+dfsg-2) ...
Setting up libgmp-dev:amd64 (2:6.2.0+dfsg-4) ...
Setting up libcolamd2:amd64 (1:5.7.1+dfsg-2) ...
Setting up libcamd2:amd64 (1:5.7.1+dfsg-2) ...
Setting up libmongoose2:amd64 (1:5.7.1+dfsg-2) ...
Setting up libglpk40:amd64 (4.65-2) ...
Setting up libklu1:amd64 (1:5.7.1+dfsg-2) ...
Setting up libccolamd2:amd64 (1:5.7.1+dfsg-2) ...
Setting up libcholmod3:amd64 (1:5.7.1+dfsg-2) ...
Setting up libspqr2:amd64 (1:5.7.1+dfsg-2) ...
Setting up libumfpack5:amd64 (1:5.7.1+dfsg-2) ...
Setting up libsuitesparse-dev:amd64 (1:5.7.1+dfsg-2) ...
Setting up libglpk-dev:amd64 (4.65-2) ...
Processing triggers for libc-bin (2.31-0ubuntu9.9) ...
[2022-09-06T05:18:11.239714099+0000] Execute script: packages/build/rgdal.sh
+ set -e
++ lsb_release -cs
+ OS_CODENAME=focal
+ '[' focal == xenial ']'
+ apt-get update -qq
+ apt-get install -y libgdal-dev libproj-dev
Reading package lists...
Building dependency tree...
Reading state information...
libgdal-dev is already the newest version (3.0.4+dfsg-1build3).
libproj-dev is already the newest version (6.3.1-1).
0 upgraded, 0 newly installed, 0 to remove and 9 not upgraded.
[2022-09-06T05:18:56.679701289+0000] Installing R package: MASS (7.3-54)
* installing to library ‘/opt/R/4.2.1/lib/R/library’
* installing *binary* package ‘MASS’ ...
* DONE (MASS)
[2022-09-06T05:18:57.082794571+0000] Installing R package: R6 (2.5.1)
* installing to library ‘/opt/R/4.2.1/lib/R/library’
* installing *binary* package ‘R6’ ...
* DONE (R6)
[2022-09-06T05:18:57.403374170+0000] Installing R package: RColorBrewer (1.1-2)
* installing to library ‘/opt/R/4.2.1/lib/R/library’
* installing *binary* package ‘RColorBrewer’ ...
* DONE (RColorBrewer)
[2022-09-06T05:18:57.717727213+0000] Installing R package: Rcpp (1.0.7)
* installing to library ‘/opt/R/4.2.1/lib/R/library’
* installing *binary* package ‘Rcpp’ ...
* DONE (Rcpp)
[2022-09-06T05:18:58.823845894+0000] Building R package: XML (3.99-0.6)
/mnt/packages/build /mnt
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for sed... /usr/bin/sed
checking for pkg-config... /usr/bin/pkg-config
checking for xml2-config... /usr/bin/xml2-config
USE_XML2 = yes
SED_EXTENDED_ARG: -E
Minor 9, Patch 10 for 2.9.10
Located parser file -I/usr/include/libxml2/parser.h
Checking for 1.8:  -I/usr/include/libxml2
Using libxml2.*
checking for gzopen in -lz... yes
checking for xmlParseFile in -lxml2... yes
checking for xmlHashSize in -lxml2... yes
Using built-in xmlHashSize
Checking DTD parsing (presence of externalSubset)...
checking for xmlHashSize in -lxml2... yes
Found xmlHashSize
checking for xmlOutputBufferCreateBuffer in -lxml2... yes
have xmlOutputBufferCreateBuffer()
checking for xmlDocDumpFormatMemoryEnc in -lxml2... yes
checking libxml/xmlversion.h usability... yes
checking libxml/xmlversion.h presence... yes
checking for libxml/xmlversion.h... yes
Expat:  FALSE
Checking for return type of xmlHashScan element routine.
No return value for xmlHashScan
xmlNs has a context field
Checking for cetype_t enumeration
Using recent version of R with cetype_t enumeration type for encoding
checking for xmlsec1-config... no
nodegc default 
xml-debug default 
Version has XML_WITH_ZLIB
Version has xmlHasFeature()

****************************************
Configuration information:

Libxml settings

libxml include directory: -I/usr/include/libxml2
libxml library directory: -lxml2 -lz  -lxml2
libxml 2:                 -DLIBXML2=1

Compilation flags:         -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1  -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 
Link flags:               -lxml2 -lz  -lxml2

****************************************
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating R/supports.R
config.status: creating inst/scripts/RSXML.csh
config.status: creating inst/scripts/RSXML.bsh
gcc -I"/opt/R/4.2.1/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1  -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1  -I. -DLIBXML2=1  -I/usr/local/include   -fpic  -g -O2  -c DocParse.c -o DocParse.o
* installing to library ‘/opt/R/4.2.1/lib/R/library’
* installing *source* package ‘XML’ ...
** package ‘XML’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
DocParse.c: In function ‘RS_XML_ParseTree’:
DocParse.c:165:7: error: ‘PROBLEM’ undeclared (first use in this function)
  165 |       PROBLEM "Can't find file %s", CHAR_DEREF(STRING_ELT(fileName, 0))
      |       ^~~~~~~
DocParse.c:165:7: note: each undeclared identifier is reported only once for each function it appears in
DocParse.c:165:14: error: expected ‘;’ before string constant
  165 |       PROBLEM "Can't find file %s", CHAR_DEREF(STRING_ELT(fileName, 0))
      |              ^~~~~~~~~~~~~~~~~~~~~
      |              ;
DocParse.c:229:14: error: expected ‘;’ before string constant
  229 |       PROBLEM "error in creating parser for %s", name
      |              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |              ;
DocParse.c:249:11: error: expected ‘;’ before string constant
  249 |    PROBLEM "XML document is invalid"
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~
      |           ;
DocParse.c: In function ‘RS_XML_internalNodeNamespaceDefinitions’:
DocParse.c:519:8: error: ‘PROBLEM’ undeclared (first use in this function)
  519 |        PROBLEM "R_internalNodeNamespaceDefinitions expects InternalXMLNode objects"
      |        ^~~~~~~
DocParse.c:519:15: error: expected ‘;’ before string constant
  519 |        PROBLEM "R_internalNodeNamespaceDefinitions expects InternalXMLNode objects"
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |               ;
DocParse.c: In function ‘R_getNodeChildByIndex’:
DocParse.c:1254:2: error: ‘PROBLEM’ undeclared (first use in this function)
 1254 |  PROBLEM "cannot index an internal node with a negative number %d", num
      |  ^~~~~~~
DocParse.c:1254:9: error: expected ‘;’ before string constant
 1254 |  PROBLEM "cannot index an internal node with a negative number %d", num
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |         ;
DocParse.c: In function ‘RS_XML_setDocumentName’:
DocParse.c:1303:2: error: ‘PROBLEM’ undeclared (first use in this function)
 1303 |  PROBLEM "NULL pointer supplied for internal document"
      |  ^~~~~~~
DocParse.c:1303:9: error: expected ‘;’ before string constant
 1303 |  PROBLEM "NULL pointer supplied for internal document"
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |         ;
DocParse.c: In function ‘RS_XML_getDocumentName’:
DocParse.c:1326:2: error: ‘PROBLEM’ undeclared (first use in this function)
 1326 |  PROBLEM "NULL pointer supplied for internal document"
      |  ^~~~~~~
DocParse.c:1326:9: error: expected ‘;’ before string constant
 1326 |  PROBLEM "NULL pointer supplied for internal document"
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |         ;
DocParse.c: In function ‘RS_XML_xmlXIncludeProcessTreeFlags’:
DocParse.c:1375:2: error: ‘PROBLEM’ undeclared (first use in this function)
 1375 |  PROBLEM "failed in XInclude"
      |  ^~~~~~~
DocParse.c:1375:9: error: expected ‘;’ before string constant
 1375 |  PROBLEM "failed in XInclude"
      |         ^~~~~~~~~~~~~~~~~~~~~
      |         ;
make: *** [/opt/R/4.2.1/lib/R/etc/Makeconf:168: DocParse.o] Error 1
ERROR: compilation failed for package ‘XML’
* removing ‘/opt/R/4.2.1/lib/R/library/XML’
################################# End Task Log ################################# 
Error: Unhandled Exception: Child Task 1216029397 failed: Error building image: Error building XML (3.99-0.6). Build exited with non-zero status: 1

The rsconnect::dependencies results:

> rsconnect::appDependencies()
              package    version source
1                MASS     7.3-54   CRAN
2              Matrix      1.4-1   CRAN
3                  R6      2.5.1   CRAN
4        RColorBrewer      1.1-2   CRAN
5                Rcpp      1.0.7   CRAN
6       RcppArmadillo 0.10.6.0.0   CRAN
7                 TTR     0.24.3   CRAN
8                 XML   3.99-0.6   CRAN
9          assertthat      0.2.1   CRAN
10          backports      1.2.1   CRAN
11          base64enc      0.1-3   CRAN
12              broom      0.7.8   CRAN
13              bslib    0.2.5.1   CRAN
14             cachem      1.0.5   CRAN
15                cli      3.0.1   CRAN
16         colorspace      2.0-2   CRAN
17         commonmark        1.7   CRAN
18              cpp11      0.3.1   CRAN
19             crayon      1.4.1   CRAN
20          crosstalk      1.1.1   CRAN
21               curl      4.3.2   CRAN
22         data.table     1.14.0   CRAN
23             digest     0.6.27   CRAN
24              dplyr      1.0.7   CRAN
25           ellipsis      0.3.2   CRAN
26           evaluate       0.14   CRAN
27              fansi      0.5.0   CRAN
28             farver      2.1.0   CRAN
29            fastmap      1.1.0   CRAN
30      flexdashboard      0.5.2   CRAN
31           forecast       8.16   CRAN
32           fracdiff      1.5-1   CRAN
33                 fs      1.5.0   CRAN
34           generics      0.1.0   CRAN
35            ggplot2      3.3.5   CRAN
36               glue      1.4.2   CRAN
37          gridExtra        2.3   CRAN
38             gtable      0.3.0   CRAN
39        highcharter      0.9.4   CRAN
40              highr        0.9   CRAN
41          htmltools    0.5.1.1   CRAN
42        htmlwidgets      1.5.4   CRAN
43             httpuv      1.6.1   CRAN
44             igraph      1.2.6   CRAN
45            isoband      0.2.5   CRAN
46          jquerylib      0.1.4   CRAN
47           jsonlite      1.7.2   CRAN
48              knitr       1.33   CRAN
49           labeling      0.4.2   CRAN
50              later      1.2.0   CRAN
51            lattice    0.20-44   CRAN
52           lazyeval      0.2.2   CRAN
53            leaflet      2.1.1   CRAN
54  leaflet.providers      1.9.0   CRAN
55          lifecycle      1.0.0   CRAN
56             lmtest     0.9-40   CRAN
57          lubridate     1.7.10   CRAN
58           magrittr      2.0.1   CRAN
59           markdown        1.1   CRAN
60               mgcv     1.8-36   CRAN
61               mime       0.11   CRAN
62            munsell      0.5.0   CRAN
63               nlme    3.1-152   CRAN
64               nnet     7.3-16   CRAN
65             pillar      1.6.2   CRAN
66          pkgconfig      2.0.3   CRAN
67               plyr      1.8.6   CRAN
68                png      0.1-7   CRAN
69           promises    1.2.0.1   CRAN
70              purrr      0.3.4   CRAN
71           quadprog      1.5-8   CRAN
72           quantmod     0.4.18   CRAN
73           rappdirs      0.3.3   CRAN
74             raster     3.4-13   CRAN
75           reshape2      1.4.4   CRAN
76              rgdal     1.5-29   CRAN
77              rjson     0.2.20   CRAN
78              rlang     0.4.11   CRAN
79              rlist    0.4.6.2   CRAN
80          rmarkdown       2.13   CRAN
81               sass      0.4.0   CRAN
82             scales      1.1.1   CRAN
83              shiny      1.6.0   CRAN
84     shinydashboard      0.7.2   CRAN
85        sourcetools      0.1.7   CRAN
86                 sp      1.4-5   CRAN
87            stringi      1.7.2   CRAN
88            stringr      1.4.0   CRAN
89             tibble      3.1.4   CRAN
90              tidyr      1.1.3   CRAN
91         tidyselect      1.1.1   CRAN
92           timeDate   3043.102   CRAN
93            tinytex       0.32   CRAN
94            tseries    0.10-51   CRAN
95               urca      1.3-0   CRAN
96               utf8      1.2.2   CRAN
97              vctrs      0.3.8   CRAN
98            viridis      0.6.1   CRAN
99        viridisLite      0.4.0   CRAN
100             withr      2.4.2   CRAN
101              xfun       0.30   CRAN
102            xtable      1.8-4   CRAN
103               xts     0.12.1   CRAN
104              yaml      2.2.1   CRAN
105               zoo      1.8-9   CRAN

my sessioninfo:

> sessionInfo(package = NULL)
R version 4.2.1 (2022-06-23)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04.5 LTS

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] reshape2_1.4.4       forecast_8.16        sp_1.4-5            
[4] leaflet_2.1.1        ggplot2_3.3.5        shinydashboard_0.7.2
[7] shiny_1.6.0 

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.7              lattice_0.20-44         leaflet.providers_1.9.0
 [4] zoo_1.8-9               assertthat_0.2.1        digest_0.6.27          
 [7] packrat_0.8.1           lmtest_0.9-40           utf8_1.2.2             
[10] mime_0.11               R6_2.5.1                plyr_1.8.6             
[13] pillar_1.6.2            rlang_0.4.11            curl_4.3.2             
[16] jquerylib_0.1.4         fracdiff_1.5-1          TTR_0.24.3             
[19] Matrix_1.4-1            labeling_0.4.2          splines_4.2.1          
[22] rgdal_1.5-29            stringr_1.4.0           htmlwidgets_1.5.4      
[25] munsell_0.5.0           compiler_4.2.1          httpuv_1.6.1           
[28] pkgconfig_2.0.3         askpass_1.1             urca_1.3-0             
[31] mgcv_1.8-36             htmltools_0.5.1.1       nnet_7.3-16            
[34] openssl_2.0.2           tidyselect_1.1.1        tibble_3.1.4           
[37] quadprog_1.5-8          fansi_0.5.0             crayon_1.4.1           
[40] dplyr_1.0.7             withr_2.4.2             later_1.2.0            
[43] grid_4.2.1              nlme_3.1-152            jsonlite_1.7.2         
[46] xtable_1.8-4            gtable_0.3.0            lifecycle_1.0.0        
[49] DBI_1.1.1               magrittr_2.0.1          scales_1.1.1           
[52] quantmod_0.4.18         cachem_1.0.5            stringi_1.7.2          
[55] farver_2.1.0            promises_1.2.0.1        tseries_0.10-51        
[58] timeDate_3043.102       bslib_0.2.5.1           ellipsis_0.3.2         
[61] xts_0.12.1              generics_0.1.0          vctrs_0.3.8            
[64] tools_4.2.1             glue_1.4.2              purrr_0.3.4            
[67] crosstalk_1.1.1         rsconnect_0.8.27        parallel_4.2.1         
[70] fastmap_1.1.0           yaml_2.2.1              colorspace_2.0-2       
[73] BiocManager_1.30.16     sass_0.4.0