My app will not deploy to shinyapps.io .
The log seems to show an error with package lme4 (which I didn't know I was using...). When I load this package with library(lme4), I get this:
Loading required package: Matrix
Error in value[[3L]](cond) :
Package ‘Matrix’ version 1.3.4 cannot be unloaded:
Error in unloadNamespace(package) : namespace ‘Matrix’ is imported by ‘survival’, ‘dr4pl’ so cannot be unloaded
In addition: Warning message:
package ‘lme4’ was built under R version 4.0.5
I definitely am using dr4pl package. Is that the cause of me not being able to deploy? How do I resolve this?
Log and sessionInfo below
Preparing to deploy application...DONE
Uploading bundle for application: 7516299...DONE
Deploying bundle: 6472604 for application: 7516299 ...
Waiting for task: 1244795287
building: Building image: 7613355
building: Fetching packages
building: Building package: rbibutils
building: Building package: RcppArmadillo
building: Building package: Rdpack
building: Building package: conquer
building: Building package: lme4
################################ Begin Task Log ################################
[2022-11-03T19:38:18.045144957+0000] Installing R package: BH (1.75.0-0)
#I SKIPPED SEVERAL "NORMAL" LOOKING LINES HERE
#Otherwise post would be over character limit
* installing to library ‘/opt/R/4.0.2/lib/R/library’
* installing *source* package ‘lme4’ ...
** package ‘lme4’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
external.cpp:412:44: error: ‘PI’ was not declared in this scope
412 | static double sqrt2pi = std::sqrt(2. * PI);
| ^~
make: *** [/opt/R/4.0.2/lib/R/etc/Makeconf:176: external.o] Error 1
ERROR: compilation failed for package ‘lme4’
* removing ‘/opt/R/4.0.2/lib/R/library/lme4’
################################# End Task Log #################################
Error: Unhandled Exception: Child Task 1244795290 failed: Error building image: Error building lme4 (1.1-26). Build exited with non-zero status: 1
Execution halted
Session Info:
R version 4.0.2 (2020-06-22)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19042)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] plotly_4.9.3 abind_1.4-5 reshape2_1.4.4 dr4pl_2.0.0 googlesheets4_1.0.0
[6] forcats_0.5.1 stringr_1.4.0 dplyr_1.0.8 purrr_0.3.4 tidyr_1.2.0
[11] tibble_3.1.6 ggplot2_3.3.5 tidyverse_1.3.1 shinydashboardPlus_2.0.3 shinydashboard_0.7.1
[16] shiny_1.6.0 readr_1.4.0
loaded via a namespace (and not attached):
[1] TH.data_1.0-10 googledrive_2.0.0 colorspace_2.0-1 ellipsis_0.3.2 rio_0.5.26 rsconnect_0.8.28 fs_1.5.2
[8] rstudioapi_0.13 listenv_0.8.0 furrr_0.2.2 farver_2.1.0 fansi_0.4.2 mvtnorm_1.1-1 lubridate_1.7.10
[15] xml2_1.3.2 codetools_0.2-18 splines_4.0.2 cachem_1.0.6 jsonlite_1.8.0 broom_0.8.0 dbplyr_2.1.1
[22] compiler_4.0.2 httr_1.4.2 drc_3.0-1 backports_1.4.1 assertthat_0.2.1 Matrix_1.3-4 fastmap_1.1.0
[29] lazyeval_0.2.2 gargle_1.2.0 cli_3.2.0 later_1.3.0 htmltools_0.5.2 tools_4.0.2 gtable_0.3.0
[36] glue_1.6.2 Rcpp_1.0.8.3 carData_3.0-4 cellranger_1.1.0 jquerylib_0.1.4 vctrs_0.3.8 crosstalk_1.1.1
[43] globals_0.14.0 rbibutils_2.2.8 openxlsx_4.2.3 rvest_1.0.0 mime_0.12 lifecycle_1.0.1 gtools_3.8.2
[50] future_1.21.0 MASS_7.3-54 zoo_1.8-9 scales_1.1.1 hms_1.0.0 promises_1.2.0.1 parallel_4.0.2
[57] sandwich_3.0-0 yaml_2.2.1 curl_4.3.1 sass_0.4.1 stringi_1.5.3 plotrix_3.8-1 zip_2.1.1
[64] Rdpack_2.4 rlang_1.0.2 pkgconfig_2.0.3 lattice_0.20-41 tensor_1.5 htmlwidgets_1.5.3 labeling_0.4.2
[71] tidyselect_1.1.2 parallelly_1.25.0 plyr_1.8.6 magrittr_2.0.3 R6_2.5.1 generics_0.1.2 multcomp_1.4-17
[78] DBI_1.1.1 pillar_1.7.0 haven_2.4.1 foreign_0.8-81 withr_2.5.0 survival_3.2-11 modelr_0.1.8
[85] crayon_1.5.1 car_3.0-10 utf8_1.2.1 grid_4.0.2 readxl_1.3.1 data.table_1.14.0 reprex_2.0.0
[92] digest_0.6.29 xtable_1.8-4 httpuv_1.6.5 openssl_2.0.4 munsell_0.5.0 viridisLite_0.4.0 bslib_0.3.1
[99] askpass_1.1