Sayed
May 3, 2024, 6:55pm
1
Hello everyone, I'm utilizing the monthly data from the Drought SPI for conducting copula family analysis. However, I'm encountering an error indicating that FitCopula is not available. Any alternative solutions would be greatly appreciated. Here are the formulas I'm employing.
Load necessary libraries
library(copula)
Assuming you have a matrix of bivariate data stored in data_matrix
library(readxl)
DS <- read_excel("D:/Lab_Works/MODELs/Drought Indices/DS.xlsx")
str(DS)
data_matrix <- matrix(DS$SPI, nrow = 12, byrow = TRUE)
data_matrix <- t(data_matrix)
data_df <- as.data.frame(data_matrix)
data_df <- as.data.frame(data_matrix)
Fit Clayton Copula
clayton_fit <- fitCopula(data_matrix, family = "clayton")
Fit Gumbel Copula
gumbel_fit <- fitCopula(data_matrix, family = "gumbel")
Fit Frank Copula
frank_fit <- fitCopula(data_matrix, family = "frank")
Evaluate Goodness of Fit
we will use AIC, BIC, or likelihood ratio tests
For example, you can print AIC and BIC values for each copula
print("AIC Values:")
print(c(clayton_fit@aic, gumbel_fit@aic, frank_fit@aic))
print("BIC Values:")
print(c(clayton_fit@bic, gumbel_fit@bic, frank_fit@bic))
Select the Best Copula
Choose the copula with the lowest AIC or BIC value
best_copula <- which.min(c(clayton_fit@aic, gumbel_fit@aic, frank_fit@aic))
Generate Graphs
Visualize copula fits using scatter plots or density plots
For example, you can plot the density of the fitted copulas
plot(clayton_fit, main = "Clayton Copula Density")
plot(gumbel_fit, main = "Gumbel Copula Density")
plot(frank_fit, main = "Frank Copula Density")
Can you give us the exact error message and some sample data?
A handy way to supply some sample data is the dput() function. In the case of a large dataset something like dput(head(mydata, 100)) should supply the data we need. Just do dput(mydata) where mydata is your data. Copy the output and paste it here between
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Sayed
May 4, 2024, 4:11pm
3
Error: unable to find an inherited method for function ‘fitCopula’ for signature ‘copula = "numeric"’
This is the data:
Month
Year
SPI
Jan
2009
-0.26397191
Feb
2009
-0.20605094
Mar
2009
-0.14396105
Apr
2009
-0.38207919
May
2009
-0.20945352
Jun
2009
-0.22154146
Jul
2009
1.07240342
Aug
2009
0.82845697
Sep
2009
0.53299504
Oct
2009
0.57630733
Nov
2009
0.54686849
Dec
2009
0.44089301
Jan
2010
0.49924778
Feb
2010
0.46245311
Mar
2010
0.58845629
Apr
2010
-0.42756782
May
2010
-0.3354378
Jun
2010
0.24019233
Jul
2010
-0.53468604
Aug
2010
0.02464352
Sep
2010
1.19248029
Oct
2010
1.18622649
Nov
2010
1.08222157
Dec
2010
1.01070086
Jan
2011
1.04593662
Feb
2011
0.98516175
Mar
2011
0.97253969
Apr
2011
1.56621549
May
2011
1.80979095
Jun
2011
1.26488243
Jul
2011
2.44755015
Aug
2011
1.90828386
Sep
2011
1.48563096
Oct
2011
1.50713619
Nov
2011
1.48969659
Dec
2011
1.5412774
Jan
2012
1.41314368
Feb
2012
1.38429025
Mar
2012
0.90821136
Apr
2012
-0.78079438
May
2012
-1.14119098
Jun
2012
-0.91914637
Jul
2012
-0.26551031
Aug
2012
0.4989908
Sep
2012
0.7894907
Oct
2012
0.87754847
Nov
2012
0.95467669
Dec
2012
1.00707821
Jan
2013
0.86776929
Feb
2013
1.0270336
Mar
2013
1.07720464
Apr
2013
1.16089096
May
2013
1.00601563
Jun
2013
-0.13069081
Jul
2013
0.84050509
Aug
2013
0.32899463
Sep
2013
0.40272548
Oct
2013
0.26611284
Nov
2013
0.22018955
Dec
2013
0.27754779
Jan
2014
0.32785041
Feb
2014
0.21469241
Mar
2014
0.35137363
Apr
2014
-0.60096189
May
2014
-0.57792846
Jun
2014
-0.52089858
Jul
2014
-1.0120304
Aug
2014
-1.24481862
Sep
2014
-1.23054915
Oct
2014
-1.23456503
Nov
2014
-1.31963218
Dec
2014
-1.28784594
Jan
2015
-1.07595523
Feb
2015
-0.89909527
Mar
2015
-1.52196379
Apr
2015
-0.60678511
May
2015
-0.86410207
Jun
2015
-0.9240581
Jul
2015
-1.25653457
Aug
2015
-1.91799041
Sep
2015
-1.95647788
Oct
2015
-1.92238268
Nov
2015
-1.68098791
Dec
2015
-1.59441186
Jan
2016
-1.64515628
Feb
2016
-1.28115574
Mar
2016
-1.35564857
Apr
2016
-0.68951787
May
2016
0.42117676
Jun
2016
0.93428164
Jul
2016
0.33817343
Aug
2016
-0.72007715
Sep
2016
-0.92702067
Oct
2016
-0.87691226
Nov
2016
-1.14843421
Dec
2016
-1.04264272
Jan
2017
-0.98153831
Feb
2017
-1.1854838
Mar
2017
-1.20819781
Apr
2017
-1.38278054
May
2017
-1.32712183
Jun
2017
-1.57520419
Jul
2017
-0.01391321
Aug
2017
0.34481497
Sep
2017
-0.11282996
Oct
2017
-0.17862514
Nov
2017
-0.22161587
Dec
2017
-0.1244979
Jan
2018
-0.0601134
Feb
2018
0.13419147
Mar
2018
0.3288504
Apr
2018
0.14851389
May
2018
0.51951671
Jun
2018
1.25098205
Jul
2018
0.02142659
Aug
2018
-0.09157937
Sep
2018
-0.24831489
Oct
2018
-0.02273472
Nov
2018
0.01718164
Dec
2018
-0.07604798
Jan
2019
-0.28469371
Feb
2019
-0.69785683
Mar
2019
-0.61516808
Apr
2019
-0.07234226
May
2019
-0.3265182
Jun
2019
-0.51174116
Jul
2019
-0.80886262
Aug
2019
-1.13653834
Sep
2019
-1.17425838
Oct
2019
-1.10453219
Nov
2019
-1.02107121
Dec
2019
-1.05682338
Jan
2020
-0.74094602
Feb
2020
-0.41013219
Mar
2020
-0.36358868
Apr
2020
-0.28600225
May
2020
0.02866663
Jun
2020
0.41581319
Jul
2020
-0.19881899
Aug
2020
0.99352199
Sep
2020
0.96753075
Oct
2020
0.76564234
Nov
2020
0.76353863
Dec
2020
0.7768291
Jan
2021
0.93481746
Feb
2021
0.84079145
Mar
2021
1.0737883
Apr
2021
1.49054387
May
2021
0.96421028
Jun
2021
0.84262474
Jul
2021
-0.34530442
Aug
2021
-0.66293992
Sep
2021
-0.53971326
Oct
2021
-0.6572469
Nov
2021
-0.59963363
Dec
2021
-0.89107728
Jan
2022
-0.98846179
Feb
2022
-1.34387442
Mar
2022
-1.15083322
Apr
2022
-0.42024513
May
2022
-0.86410207
Jun
2022
-1.22176093
Jul
2022
-0.73747055
Aug
2022
0.59836805
Sep
2022
0.87704287
Oct
2022
1.03006989
Nov
2022
1.09263212
Dec
2022
0.98165859
Jan
2023
1.16163358
Feb
2023
1.22316397
Mar
2023
1.22199859
Apr
2023
1.55655887
May
2023
1.20350489
Jun
2023
1.25098205
Jul
2023
0.66579773
Aug
2023
0.37773578
Sep
2023
0.35729374
Oct
2023
0.21539771
Nov
2023
0.36105961
Dec
2023
0.63836084
It might be useful for you to run your code one line at a time, then copy and paste both the line the triggers the first error together with the first error itself.
Bivek
June 18, 2024, 9:16am
5
Hello Sir; Sayed
I am also working on copula for drought analysis, can you please help me if your error was solved
I will be thankful to you...
system
Closed
September 16, 2024, 9:17am
6
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