Hello,
I am experiencing frequent fatal errors that cause my Rstudio session to crash. The log files give the following errors (many many of them, not enough room to paste all):
04 Apr 2018 19:54:16 [rdesktop] ERROR system error 104 (Connection reset by peer); OCCURRED AT: void rstudio::core::http::AsyncClient<SocketService>::handleReadStatusLine(const rstudio_boost::system::error_code&) [with SocketService = rstudio_boost::asio::basic_stream_socket<rstudio_boost::asio::local::stream_protocol>] /home/ubuntu/rstudio/src/cpp/core/include/core/http/AsyncClient.hpp:376; LOGGED FROM: void rstudio::desktop::NetworkReply::onError(const rstudio::core::Error&) /home/ubuntu/rstudio/src/cpp/desktop/DesktopNetworkReply.cpp:288
03 Apr 2018 19:07:28 [rsession-fintzij] CLIENT EXCEPTION (rsession-fintzij): (TypeError) : undefined is not an object (evaluating 'this.a.a.r.row');|||com/google/gwt/dev/jjs/intrinsic/com/google/gwt/lang/Exceptions.java#28::wrap|||com/google/gwt/core/client/impl/SchedulerImpl.java#167::runScheduledTasks|||com/google/gwt/core/client/impl/SchedulerImpl.java#338::flushPostEventPumpCommands|||com/google/gwt/core/client/impl/SchedulerImpl.java#76::execute|||com/google/gwt/core/client/impl/SchedulerImpl.java#140::execute|||com/google/gwt/core/client/impl/Impl.java#244::apply|||com/google/gwt/core/client/impl/Impl.java#283::entry0|||#-1::anonymous|||com/google/gwt/cell/client/AbstractEditableCell.java#41::viewDataMap|||Client-ID: 33e600bb-c1b1-46bf-b562-ab5cba070b0e|||User-Agent: Mozilla/5.0 (X11 N Linux x86_64) AppleWebKit/538.1 (KHTML, like Gecko) RStudio Safari/538.1 Qt/5.4.2
I'm not sure how to go about diagnosing the problem. Deleting the session info, as suggested in a few threads, has not solved the problem. Any suggestions on how to prevent this behavior would be really appreciated. I have copied the system info from the diagnostic file below.
Thank you!
Jon
[1] "1.1.442"
$R
[1] "/usr/bin/R"
$pdflatex
[1] "/usr/bin/pdflatex"
$bibtex
[1] "/usr/bin/bibtex"
$gcc
[1] "/usr/bin/gcc"
$git
[1] "/usr/bin/git"
$svn
[1] ""
R version 3.4.4 (2018-03-15)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.4 LTS
Matrix products: default
BLAS: /usr/lib/libblas/libblas.so.3.6.0
LAPACK: /usr/lib/lapack/liblapack.so.3.6.0
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] stemr_0.1.0
loaded via a namespace (and not attached):
[1] compiler_3.4.4 tools_3.4.4 yaml_2.1.18 Rcpp_0.12.16 odeintr_1.7.1
SysInfo:
sysname release version
"Linux" "4.13.0-37-generic" "#42~16.04.1-Ubuntu SMP Wed Mar 7 16:03:28 UTC 2018"
nodename machine login
"fintzij-ThinkPad-T470s" "x86_64" "unknown"
user effective_user
"fintzij" "fintzij"
R Version:
_
platform x86_64-pc-linux-gnu
arch x86_64
os linux-gnu
system x86_64, linux-gnu
status
major 3
minor 4.4
year 2018
month 03
day 15
svn rev 74408
language R
version.string R version 3.4.4 (2018-03-15)
nickname Someone to Lean On
$CLICOLOR_FORCE
[1] "1"
$CLUTTER_IM_MODULE
[1] "xim"
$COMPIZ_BIN_PATH
[1] "/usr/bin/"
$COMPIZ_CONFIG_PROFILE
[1] "ubuntu"
$DBUS_SESSION_BUS_ADDRESS
[1] "unix:abstract=/tmp/dbus-0PNqiCsses"
$DEFAULTS_PATH
[1] "/usr/share/gconf/ubuntu.default.path"
$DESKTOP_SESSION
[1] "ubuntu"
$DISPLAY
[1] ":0"
$EDITOR
[1] "vi"
$GDM_LANG
[1] "en_US"
$GDMSESSION
[1] "ubuntu"
$GIO_LAUNCHED_DESKTOP_FILE
[1] "/usr/share/applications/rstudio.desktop"
$GIO_LAUNCHED_DESKTOP_FILE_PID
[1] "23478"
$GIT_ASKPASS
[1] "rpostback-askpass"
$GNOME_DESKTOP_SESSION_ID
[1] "this-is-deprecated"
$GNOME_KEYRING_CONTROL
[1] ""
$GNOME_KEYRING_PID
[1] ""
$GPG_AGENT_INFO
[1] "/home/fintzij/.gnupg/S.gpg-agent:0:1"
$GTK2_MODULES
[1] "overlay-scrollbar"
$GTK_IM_MODULE
[1] "ibus"
$GTK_MODULES
[1] "gail:atk-bridge:unity-gtk-module"
$HOME
[1] "/home/fintzij"
$IM_CONFIG_PHASE
[1] "1"
$INSTANCE
[1] ""
$JOB
[1] "unity-settings-daemon"
$LANG
[1] "en_US.UTF-8"
$LANGUAGE
[1] "en_US"
$LD_LIBRARY_PATH
[1] "/usr/lib/R/lib::/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/default-java/jre/lib/amd64/server"
$LN_S
[1] "ln -s"
$LOGNAME
[1] "fintzij"
$MAKE
[1] "make"
$MANDATORY_PATH
[1] "/usr/share/gconf/ubuntu.mandatory.path"
$PAGER
[1] "/usr/bin/pager"
$PATH
[1] "/home/fintzij/bin:/home/fintzij/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin"
$PWD
[1] "/home/fintzij"
$QT4_IM_MODULE
[1] "xim"
$QT_ACCESSIBILITY
[1] "1"
$QT_IM_MODULE
[1] "ibus"
$QT_LINUX_ACCESSIBILITY_ALWAYS_ON
[1] "1"
$QT_QPA_PLATFORMTHEME
[1] "appmenu-qt5"
$R_BROWSER
[1] "xdg-open"
$R_BZIPCMD
[1] "/bin/bzip2"
$R_DOC_DIR
[1] "/usr/share/R/doc"
$R_GZIPCMD
[1] "/bin/gzip -n"
$R_HOME
[1] "/usr/lib/R"
$R_INCLUDE_DIR
[1] "/usr/share/R/include"
$R_LIBS_SITE
[1] "/usr/local/lib/R/site-library:/usr/lib/R/site-library:/usr/lib/R/library"
$R_LIBS_USER
[1] "~/R/x86_64-pc-linux-gnu-library/3.4"
$RMARKDOWN_MATHJAX_PATH
[1] "/usr/lib/rstudio/resources/mathjax-26"
$R_PAPERSIZE
[1] "letter"
$R_PAPERSIZE_USER
[1] "letter"
$R_PDFVIEWER
[1] "/usr/bin/xdg-open"
$R_PLATFORM
[1] "x86_64-pc-linux-gnu"
$R_PRINTCMD
[1] "/usr/bin/lpr"
$R_RD4PDF
[1] "times,inconsolata,hyper"
$R_SESSION_TMPDIR
[1] "/tmp/Rtmp9YCmYc"
$R_SHARE_DIR
[1] "/usr/share/R/share"
$RS_LOCAL_PEER
[1] "/tmp/28042-rsession"
$RS_PPM_FD_READ
[1] "30"
$RS_PPM_FD_WRITE
[1] "31"
$RS_RPOSTBACK_PATH
[1] "/usr/lib/rstudio/bin/rpostback"
$RS_SHARED_SECRET
[1] "16816927778469308861804289383"
$RSTUDIO
[1] "1"
$RSTUDIO_CONSOLE_COLOR
[1] "256"
$RSTUDIO_CONSOLE_WIDTH
[1] "176"
$RSTUDIO_PANDOC
[1] "/usr/lib/rstudio/bin/pandoc"
$RSTUDIO_SESSION_PORT
[1] "28042"
$RSTUDIO_USER_IDENTITY
[1] "fintzij"
$RSTUDIO_WINUTILS
[1] "bin/winutils"
$R_SYSTEM_ABI
[1] "linux,gcc,gxx,gfortran,?"
$R_TEXI2DVICMD
[1] "/usr/bin/texi2dvi"
$R_UNZIPCMD
[1] "/usr/bin/unzip"
$R_ZIPCMD
[1] "/usr/bin/zip"
$SED
[1] "/bin/sed"
$SESSION
[1] "ubuntu"
$SESSIONTYPE
[1] "gnome-session"
$SHELL
[1] "/bin/bash"
$SHLVL
[1] "0"
$SSH_AUTH_SOCK
[1] "/run/user/1000/keyring/ssh"
$TAR
[1] "/bin/tar"
$TERM
[1] "xterm-256color"
$UNITY_DEFAULT_PROFILE
[1] "unity"
$UNITY_HAS_3D_SUPPORT
[1] "true"
$UPSTART_EVENTS
[1] "xsession started"
$UPSTART_INSTANCE
[1] ""
$UPSTART_JOB
[1] "unity7"
$UPSTART_SESSION
[1] "unix:abstract=/com/ubuntu/upstart-session/1000/1341"
$USER
[1] "fintzij"
$XAUTHORITY
[1] "/home/fintzij/.Xauthority"
$XDG_CONFIG_DIRS
[1] "/etc/xdg/xdg-ubuntu:/usr/share/upstart/xdg:/etc/xdg"
$XDG_CURRENT_DESKTOP
[1] "Unity"
$XDG_DATA_DIRS
[1] "/usr/share/ubuntu:/usr/share/gnome:/usr/local/share:/usr/share:/var/lib/snapd/desktop:/var/lib/snapd/desktop"
$XDG_GREETER_DATA_DIR
[1] "/var/lib/lightdm-data/fintzij"
$XDG_MENU_PREFIX
[1] "gnome-"
$XDG_RUNTIME_DIR
[1] "/run/user/1000"
$XDG_SEAT
[1] "seat0"
$XDG_SEAT_PATH
[1] "/org/freedesktop/DisplayManager/Seat0"
$XDG_SESSION_DESKTOP
[1] "ubuntu"
$XDG_SESSION_ID
[1] "c2"
$XDG_SESSION_PATH
[1] "/org/freedesktop/DisplayManager/Session0"
$XDG_SESSION_TYPE
[1] "x11"
$XDG_VTNR
[1] "7"
$XMODIFIERS
[1] "@im=ibus"
[1] ".GlobalEnv" "package:stemr" "tools:rstudio" "package:stats" "package:graphics" "package:grDevices" "package:utils" "package:datasets"
[9] "package:methods" "Autoloads" "package:base"