Rstudio Server is running but rstudio-server.log is not updating

drstory · June 3, 2020, 7:05pm

Using RStudio Pro Version 1.2.1335-1 on CentOS Linux release 7.3.1611 (Core).

rstudio-server status shows that it's running and the GUI is working.

I'm opening this topic on June 3, 2020. My tail of /var/lib/rstudio-server/monitor/log/rstudio-server.log was last updated on May 31, 2020.

Can anyone help me understand why I'm seeing permission denied on users' home directories and why my rstudio-server.log file is not updating?

drstory · June 3, 2020, 7:07pm

[root@sc1rstudio2 ~]# rstudio-server status 
● rstudio-server.service - RStudio Server> Hint: Some lines were ellipsized, use -l to show in full.
   Loaded: loaded (/etc/systemd/system/rstudio-server.service; enabled; vendor preset: disabled)
   Active: active (running) since Wed 2020-06-03 11:27:55 PDT; 32min ago
  Process: 47976 ExecStop=/usr/bin/killall -TERM rserver (code=exited, status=0/SUCCESS)
  Process: 47993 ExecStart=/usr/lib/rstudio-server/bin/rserver (code=exited, status=0/SUCCESS)
 Main PID: 47994 (rserver)
   CGroup: /system.slice/rstudio-server.service
           ├─47994 /usr/lib/rstudio-server/bin/rserver
           ├─48135 /usr/lib/rstudio-server/bin/rserver-admin --admin-monitor-data-path /var/lib/rstudio-server/monitor --admin-monitor-minute-archive-days 30 --admin-rrd-rrdtool-binary /usr/bin/rrdtool --admin-www-path /usr/lib/rstudio-server/www-admin --admin-upstream-version f1ac34523717...
           ├─48136 /usr/lib/rstudio-server/bin/rserver-monitor --monitor-domain-socket /tmp/rstudio-rserver/rserver-monitor.socket --monitor-data-path /var/lib/rstudio-server/monitor --monitor-rstudio-session-metrics 1 --monitor-stderr-enabled 0 --monitor-rrd-enabled 1 --monitor-graphite-e...
           ├─48137 nginx: master process /usr/lib/rstudio-server/bin/rserver-http
           ├─48139 nginx: worker process
           └─48140 /usr/bin/rrdtool -

Jun 03 11:57:56 sc1rstudio2.eth.rsshpc1.sc1.science.roche.com rserver-session-reaper[49484]: ERROR system error 13 (Permission denied) [path=/home/users/baigf1/.rstudio, target-dir=]; OCCURRED AT: rstudio::core::Error rstudio::core::FilePath::createDirectory(const string&) const /var/lib/j...
Jun 03 11:57:56 sc1rstudio2.eth.rsshpc1.sc1.science.roche.com rserver-session-reaper[49484]: ERROR system error 13 (Permission denied) [path=/home/users/baigf1/.rstudio/sessions/active, target-dir=]; OCCURRED AT: rstudio::core::Error rstudio::core::FilePath::createDirectory(const string&) ...
Jun 03 11:57:56 sc1rstudio2.eth.rsshpc1.sc1.science.roche.com rserver-session-reaper[49484]: ERROR system error 13 (Permission denied) [path=/home/users/baigf1/.rstudio, target-dir=]; OCCURRED AT: rstudio::core::Error rstudio::core::FilePath::createDirectory(const string&) const /var/lib/j...
Jun 03 11:57:56 sc1rstudio2.eth.rsshpc1.sc1.science.roche.com rserver-session-reaper[49484]: ERROR system error 13 (Permission denied) [path=/home/users/baigf1/.rstudio/sessions/active, target-dir=]; OCCURRED AT: rstudio::core::Error rstudio::core::FilePath::createDirectory(const string&) ...
Jun 03 11:57:56 sc1rstudio2.eth.rsshpc1.sc1.science.roche.com rserver-session-reaper[49484]: ERROR system error 13 (Permission denied) [path=/home/users/xiy5/.rstudio, target-dir=]; OCCURRED AT: rstudio::core::Error rstudio::core::FilePath::createDirectory(const string&) const /var/lib/jen...
Jun 03 11:57:56 sc1rstudio2.eth.rsshpc1.sc1.science.roche.com rserver-session-reaper[49484]: ERROR system error 13 (Permission denied) [path=/home/users/xiy5/.rstudio/sessions/active, target-dir=]; OCCURRED AT: rstudio::core::Error rstudio::core::FilePath::createDirectory(const string&) co...
Jun 03 11:57:56 sc1rstudio2.eth.rsshpc1.sc1.science.roche.com rserver-session-reaper[49484]: ERROR system error 13 (Permission denied) [path=/home/users/garcj124/.rstudio, target-dir=]; OCCURRED AT: rstudio::core::Error rstudio::core::FilePath::createDirectory(const string&) const /var/lib...
Jun 03 11:57:56 sc1rstudio2.eth.rsshpc1.sc1.science.roche.com rserver-session-reaper[49484]: ERROR system error 13 (Permission denied) [path=/home/users/garcj124/.rstudio/sessions/active, target-dir=]; OCCURRED AT: rstudio::core::Error rstudio::core::FilePath::createDirectory(const string&...
Jun 03 11:57:56 sc1rstudio2.eth.rsshpc1.sc1.science.roche.com rserver-session-reaper[49484]: ERROR system error 13 (Permission denied) [path=/home/users/colberk1/.rstudio, target-dir=]; OCCURRED AT: rstudio::core::Error rstudio::core::FilePath::createDirectory(const string&) const /var/lib...
Jun 03 11:57:56 sc1rstudio2.eth.rsshpc1.sc1.science.roche.com rserver-session-reaper[49484]: ERROR system error 13 (Permission denied) [path=/home/users/colberk1/.rstudio/sessions/active, target-dir=]; OCCURRED AT: rstudio::core::Error rstudio::core::FilePath::createDirectory(const string&...

drstory · June 3, 2020, 7:07pm

[root@sc1rstudio2 ~]# tail /var/lib/rstudio-server/monitor/log/rstudio-server.log
28 May 2020 17:55:30 [rserver] ERROR rserver-launcher: dircolors: no SHELL environment variable, and no shell type option given|||; LOGGED FROM: void rstudio::server::ProcessMonitor::onProcessStderr(rstudio::server::ProcessMonitor::Process, const string&) /var/lib/jenkins/workspace/IDE_pro-pipeline_v1.2/src/cpp/server/ServerProcessMonitor.cpp:209
28 May 2020 21:29:33 [rserver] ERROR system error 13 (Permission denied) [request-uri=/workspaces/default_session_scope?project=926ebcfc78a31&id=6af43403]; OCCURRED AT: void rstudio::core::http::LocalStreamAsyncClient::handleConnect(const rstudio_boost::system::error_code&) /var/lib/jenkins/workspace/IDE_pro-pipeline_v1.2/src/cpp/core/include/core/http/LocalStreamAsyncClient.hpp:119; LOGGED FROM: void rstudio::server::session_proxy::{anonymous}::logIfNotConnectionTerminated(const rstudio::core::Error&, const rstudio::core::http::Request&) /var/lib/jenkins/workspace/IDE_pro-pipeline_v1.2/src/cpp/server/ServerSessionProxy.cpp:402
29 May 2020 02:08:54 [rserver] ERROR rserver-launcher: |||The following have been reloaded with a version change:|||  1) git/2.14.1 => git/2.9.3||||||; LOGGED FROM: void rstudio::server::ProcessMonitor::onProcessStderr(rstudio::server::ProcessMonitor::Process, const string&) /var/lib/jenkins/workspace/IDE_pro-pipeline_v1.2/src/cpp/server/ServerProcessMonitor.cpp:209
29 May 2020 02:08:54 [rserver] ERROR rserver-launcher: dircolors: no SHELL environment variable, and no shell type option given|||; LOGGED FROM: void rstudio::server::ProcessMonitor::onProcessStderr(rstudio::server::ProcessMonitor::Process, const string&) /var/lib/jenkins/workspace/IDE_pro-pipeline_v1.2/src/cpp/server/ServerProcessMonitor.cpp:209
29 May 2020 18:44:34 [rserver] ERROR rserver-launcher: |||The following have been reloaded with a version change:|||  1) git/2.14.1 => git/2.9.3||||||; LOGGED FROM: void rstudio::server::ProcessMonitor::onProcessStderr(rstudio::server::ProcessMonitor::Process, const string&) /var/lib/jenkins/workspace/IDE_pro-pipeline_v1.2/src/cpp/server/ServerProcessMonitor.cpp:209
29 May 2020 18:44:35 [rserver] ERROR rserver-launcher: dircolors: no SHELL environment variable, and no shell type option given|||; LOGGED FROM: void rstudio::server::ProcessMonitor::onProcessStderr(rstudio::server::ProcessMonitor::Process, const string&) /var/lib/jenkins/workspace/IDE_pro-pipeline_v1.2/src/cpp/server/ServerProcessMonitor.cpp:209
29 May 2020 22:16:54 [rserver] ERROR rserver-launcher: |||The following have been reloaded with a version change:|||  1) git/2.14.1 => git/2.9.3||||||; LOGGED FROM: void rstudio::server::ProcessMonitor::onProcessStderr(rstudio::server::ProcessMonitor::Process, const string&) /var/lib/jenkins/workspace/IDE_pro-pipeline_v1.2/src/cpp/server/ServerProcessMonitor.cpp:209
29 May 2020 22:16:54 [rserver] ERROR rserver-launcher: dircolors: no SHELL environment variable, and no shell type option given|||; LOGGED FROM: void rstudio::server::ProcessMonitor::onProcessStderr(rstudio::server::ProcessMonitor::Process, const string&) /var/lib/jenkins/workspace/IDE_pro-pipeline_v1.2/src/cpp/server/ServerProcessMonitor.cpp:209
31 May 2020 02:45:58 [rserver] ERROR rserver-launcher: |||The following have been reloaded with a version change:|||  1) git/2.14.1 => git/2.9.3||||||; LOGGED FROM: void rstudio::server::ProcessMonitor::onProcessStderr(rstudio::server::ProcessMonitor::Process, const string&) /var/lib/jenkins/workspace/IDE_pro-pipeline_v1.2/src/cpp/server/ServerProcessMonitor.cpp:209
31 May 2020 02:45:59 [rserver] ERROR rserver-launcher: dircolors: no SHELL environment variable, and no shell type option given|||; LOGGED FROM: void rstudio::server::ProcessMonitor::onProcessStderr(rstudio::server::ProcessMonitor::Process, const string&) /var/lib/jenkins/workspace/IDE_pro-pipeline_v1.2/src/cpp/server/ServerProcessMonitor.cpp:209

system · June 24, 2020, 7:08pm

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