Error Information:
Description of issue -
RStudio IDE crashes when trying to opening. It was working fine.
I was forcing a python version to use tensorflow (& keras) from conda with 'reticulate' package.
(base) matias@samba:~$ rstudio
WebEngineContext used before QtWebEngine::initialize() or OpenGL context creation failed.
Failed to create OpenGL context for format QSurfaceFormat(version 2.0, options QFlags<QSurfaceFormat::FormatOption>(), depthBufferSize 24, redBufferSize -1, greenBufferSize -1, blueBufferSize -1, alphaBufferSize -1, stencilBufferSize 8, samples 0, swapBehavior QSurfaceFormat::DefaultSwapBehavior, swapInterval 1, colorSpace QSurfaceFormat::DefaultColorSpace, profile QSurfaceFormat::NoProfile)
[64574:64576:20210305,103457.517222:ERROR file_io_posix.cc:148] open /home/matias/.r/crashpad_database/pending/7ddfb56a-f03f-4b4e-866e-8346c1e7d282.lock: File exists (17)
[64574:64576:20210305,103457.517273:ERROR file_io_posix.cc:148] open /home/matias/.r/crashpad_database/pending/1b5eb1ab-c3e4-497b-a0b3-a85271551a37.lock: File exists (17)
[64574:64576:20210305,103457.517286:ERROR file_io_posix.cc:148] open /home/matias/.r/crashpad_database/pending/7a20e969-87f5-4c1c-89bf-03e57b8393d6.lock: File exists (17)
[64574:64574:20210305,103457.519650:ERROR process_memory_range.cc:86] read out of range
[64574:64574:20210305,103457.519660:ERROR elf_image_reader.cc:558] missing nul-terminator
[64574:64574:20210305,103457.519860:ERROR process_reader_linux.cc:445] no module mappings 0x7fa505659000
[64574:64574:20210305,103457.522862:ERROR elf_dynamic_array_reader.h:61] tag not found
[64574:64574:20210305,103457.523145:ERROR elf_dynamic_array_reader.h:61] tag not found
[64574:64574:20210305,103457.524755:ERROR elf_dynamic_array_reader.h:61] tag not found
[64574:64574:20210305,103457.524804:ERROR elf_dynamic_array_reader.h:61] tag not found
[64574:64574:20210305,103457.525289:ERROR elf_dynamic_array_reader.h:61] tag not found
[64574:64574:20210305,103457.525325:ERROR elf_dynamic_array_reader.h:61] tag not found
[64574:64574:20210305,103457.525363:ERROR elf_dynamic_array_reader.h:61] tag not found
[64574:64574:20210305,103457.525410:ERROR elf_dynamic_array_reader.h:61] tag not found
[64574:64574:20210305,103457.525456:ERROR elf_dynamic_array_reader.h:61] tag not found
[64574:64574:20210305,103457.525535:ERROR elf_dynamic_array_reader.h:61] tag not found
[64574:64574:20210305,103457.525581:ERROR elf_dynamic_array_reader.h:61] tag not found
[64574:64574:20210305,103457.525623:ERROR elf_dynamic_array_reader.h:61] tag not found
[64574:64574:20210305,103457.525666:ERROR elf_dynamic_array_reader.h:61] tag not found
[64574:64576:20210305,103457.545793:ERROR directory_reader_posix.cc:42] opendir: No such file or directory (2)
Abortado (`core' generado)
Attempted steps taken to fix -
rm -f ~/.Rprofile
mv ~/.local/share/rstudio ~/.local/share/rstudio-backup
mv ~/.config/RStudio ~/backup-RStudio
System Information:
- RStudio Edition: Desktop
- RStudio Version: rstudio-1.4.1103-amd64.deb
- OS Version: Ubuntu 20.04.2 LTS
- R Version: 3.6.3
- Output your diagnostics report (if possible):
RStudio Diagnostics Report
==========================
WARNING: This report may contain sensitive security information and / or
personally identifiable information. Please audit the below and redact any
sensitive information before submitting your diagnostics report.
Generated: Fri Mar 5 11:04:05 2021
RStudio Version
--------------------------------------------------
1.4.1103
Session Information
--------------------------------------------------
R version 3.6.3 (2020-02-29)
Platform: x86_64-conda_cos6-linux-gnu (64-bit)
Running under: Ubuntu 20.04.2 LTS
Matrix products: default
BLAS: /home/matias/anaconda3/lib/libblas.so.3.9.0
LAPACK: /home/matias/anaconda3/lib/liblapack.so.3.9.0
locale:
[1] LC_CTYPE=es_ES.UTF-8 LC_NUMERIC=C
[3] LC_TIME=fr_FR.UTF-8 LC_COLLATE=es_ES.UTF-8
[5] LC_MONETARY=fr_FR.UTF-8 LC_MESSAGES=es_ES.UTF-8
[7] LC_PAPER=fr_FR.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_3.6.3 tools_3.6.3
System Information
--------------------------------------------------
sysname : Linux
release : 5.8.0-43-generic
version : #49~20.04.1-Ubuntu SMP Fri Feb 5 09:57:56 UTC 2021
nodename : samba
machine : x86_64
login : matias
user : matias
effective_user : matias
Platform Information
--------------------------------------------------
OS.type : unix
file.sep : /
dynlib.ext : .so
GUI : X11
endian : little
pkgType : source
path.sep : :
r_arch :
Environment Variables
--------------------------------------------------
_ : /usr/bin/rstudio
_CE_CONDA :
_CE_M :
_CONDA_PYTHON_SYSCONFIGDATA_NAME : _sysconfigdata_x86_64_conda_cos6_linux_gnu
ADDR2LINE : /home/matias/anaconda3/bin/x86_64-conda-linux-gnu-addr2line
AR : /home/matias/anaconda3/bin/x86_64-conda-linux-gnu-ar
AS : /home/matias/anaconda3/bin/x86_64-conda-linux-gnu-as
BUILD : x86_64-conda-linux-gnu
build_alias : x86_64-conda-linux-gnu
CC : /home/matias/anaconda3/bin/x86_64-conda-linux-gnu-cc
CC_FOR_BUILD : /home/matias/anaconda3/bin/x86_64-conda-linux-gnu-cc
CFLAGS : -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/matias/anaconda3/include
CLICOLOR_FORCE : 1
CMAKE_ARGS : -DCMAKE_AR=/home/matias/anaconda3/bin/x86_64-conda-linux-gnu-ar -DCMAKE_CXX_COMPILER_AR=/home/matias/anaconda3/bin/x86_64-conda-linux-gnu-gcc-ar -DCMAKE_C_COMPILER_AR=/home/matias/anaconda3/bin/x86_64-conda-linux-gnu-gcc-ar -DCMAKE_RANLIB=/home/matias/anaconda3/bin/x86_64-conda-linux-gnu-ranlib -DCMAKE_CXX_COMPILER_RANLIB=/home/matias/anaconda3/bin/x86_64-conda-linux-gnu-gcc-ranlib -DCMAKE_C_COMPILER_RANLIB=/home/matias/anaconda3/bin/x86_64-conda-linux-gnu-gcc-ranlib -DCMAKE_LINKER=/home/matias/anaconda3/bin/x86_64-conda-linux-gnu-ld -DCMAKE_STRIP=/home/matias/anaconda3/bin/x86_64-conda-linux-gnu-strip
CMAKE_PREFIX_PATH : /home/matias/anaconda3:/home/matias/anaconda3/x86_64-conda-linux-gnu/sysroot/usr
COLORTERM : truecolor
CONDA_BUILD_SYSROOT : /home/matias/anaconda3/x86_64-conda-linux-gnu/sysroot
CONDA_DEFAULT_ENV : base
CONDA_EXE : /home/matias/anaconda3/bin/conda
CONDA_PREFIX : /home/matias/anaconda3
CONDA_PROMPT_MODIFIER : (base)
CONDA_PYTHON_EXE : /home/matias/anaconda3/bin/python
CONDA_SHLVL : 1
CPL_ZIP_ENCODING : UTF-8
CPP : /home/matias/anaconda3/bin/x86_64-conda-linux-gnu-cpp
CPPFLAGS : -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/matias/anaconda3/include
CXX : /home/matias/anaconda3/bin/x86_64-conda-linux-gnu-c++
CXX_FOR_BUILD : /home/matias/anaconda3/bin/x86_64-conda-linux-gnu-c++
CXXFILT : /home/matias/anaconda3/bin/x86_64-conda-linux-gnu-c++filt
CXXFLAGS : -fvisibility-inlines-hidden -std=c++17 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/matias/anaconda3/include
DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/1000/bus
DEBUG_CFLAGS : -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fvar-tracking-assignments -ffunction-sections -pipe -isystem /home/matias/anaconda3/include
DEBUG_CPPFLAGS : -D_DEBUG -D_FORTIFY_SOURCE=2 -Og -isystem /home/matias/anaconda3/include
DEBUG_CXXFLAGS : -fvisibility-inlines-hidden -std=c++17 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fvar-tracking-assignments -ffunction-sections -pipe -isystem /home/matias/anaconda3/include
DEBUG_FFLAGS : -fopenmp -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/matias/anaconda3/include -fopenmp -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fcheck=all -fbacktrace -fimplicit-none -fvar-tracking-assignments -ffunction-sections -pipe
DEBUG_FORTRANFLAGS : -fopenmp -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/matias/anaconda3/include -fopenmp -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fcheck=all -fbacktrace -fimplicit-none -fvar-tracking-assignments -ffunction-sections -pipe
DESKTOP_SESSION : ubuntu
DISPLAY : :1
EDITOR : vi
ELFEDIT : /home/matias/anaconda3/bin/x86_64-conda-linux-gnu-elfedit
F77 : /home/matias/anaconda3/bin/x86_64-conda-linux-gnu-gfortran
F90 : /home/matias/anaconda3/bin/x86_64-conda-linux-gnu-gfortran
F95 : /home/matias/anaconda3/bin/x86_64-conda-linux-gnu-f95
FC : /home/matias/anaconda3/bin/x86_64-conda-linux-gnu-gfortran
FFLAGS : -fopenmp -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/matias/anaconda3/include
FORTRANFLAGS : -fopenmp -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/matias/anaconda3/include
GCC : /home/matias/anaconda3/bin/x86_64-conda-linux-gnu-gcc
GCC_AR : /home/matias/anaconda3/bin/x86_64-conda-linux-gnu-gcc-ar
GCC_NM : /home/matias/anaconda3/bin/x86_64-conda-linux-gnu-gcc-nm
GCC_RANLIB : /home/matias/anaconda3/bin/x86_64-conda-linux-gnu-gcc-ranlib
GDAL_DATA : /home/matias/anaconda3/share/gdal
GDMSESSION : ubuntu
GFORTRAN : /home/matias/anaconda3/bin/x86_64-conda-linux-gnu-gfortran
GIT_ASKPASS : rpostback-askpass
GJS_DEBUG_OUTPUT : stderr
GJS_DEBUG_TOPICS : JS ERROR;JS LOG
GNOME_DESKTOP_SESSION_ID : this-is-deprecated
GNOME_SHELL_SESSION_MODE : ubuntu
GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/adefc84c_575b_4624_a072_42aff934854c
GNOME_TERMINAL_SERVICE : :1.136
GPG_AGENT_INFO : /run/user/1000/gnupg/S.gpg-agent:0:1
GPROF : /home/matias/anaconda3/bin/x86_64-conda-linux-gnu-gprof
GSETTINGS_SCHEMA_DIR : /home/matias/anaconda3/share/glib-2.0/schemas
GSETTINGS_SCHEMA_DIR_CONDA_BACKUP :
GTK_MODULES : gail:atk-bridge
GXX : /home/matias/anaconda3/bin/x86_64-conda-linux-gnu-g++
HOME : /home/matias
HOST : *** redacted ***
host_alias : *** redacted ***
IM_CONFIG_PHASE : 1
INVOCATION_ID : df34c051e51e4657b7e3af770423c340
JOURNAL_STREAM : 8:42679
LANG : es_ES.UTF-8
LC_ADDRESS : fr_FR.UTF-8
LC_IDENTIFICATION : fr_FR.UTF-8
LC_MEASUREMENT : fr_FR.UTF-8
LC_MONETARY : fr_FR.UTF-8
LC_NAME : fr_FR.UTF-8
LC_NUMERIC : fr_FR.UTF-8
LC_PAPER : fr_FR.UTF-8
LC_TELEPHONE : fr_FR.UTF-8
LC_TIME : fr_FR.UTF-8
LD : /home/matias/anaconda3/bin/x86_64-conda-linux-gnu-ld
LD_GOLD : /home/matias/anaconda3/bin/x86_64-conda-linux-gnu-ld.gold
LD_LIBRARY_PATH : /home/matias/anaconda3/lib/R/lib:
LDFLAGS : -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/matias/anaconda3/lib -Wl,-rpath-link,/home/matias/anaconda3/lib -L/home/matias/anaconda3/lib
LESSCLOSE : /usr/bin/lesspipe %s %s
LESSOPEN : | /usr/bin/lesspipe %s
LN_S : ln -s
LOGNAME : *** redacted ***
LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36:
MAKE : make
MANAGERPID : 1424
NM : /home/matias/anaconda3/bin/x86_64-conda-linux-gnu-nm
OBJCOPY : /home/matias/anaconda3/bin/x86_64-conda-linux-gnu-objcopy
OBJDUMP : /home/matias/anaconda3/bin/x86_64-conda-linux-gnu-objdump
OLDPWD : /usr/bin
PAGER : less
PATH : /home/matias/anaconda3/bin:/home/matias/anaconda3/condabin:/home/matias/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/usr/lib/rstudio/bin/postback
PROJ_LIB : /home/matias/anaconda3/share/proj
PROJ_NETWORK : ON
PWD : *** redacted ***
QT_ACCESSIBILITY : 1
QT_IM_MODULE : ibus
R_BROWSER :
R_BZIPCMD : /home/matias/anaconda3/bin/bzip2
R_DOC_DIR : /home/matias/anaconda3/lib/R/doc
R_GZIPCMD : gzip
R_HOME : /home/matias/anaconda3/lib/R
R_INCLUDE_DIR : /home/matias/anaconda3/lib/R/include
R_LIBS_SITE :
R_LIBS_USER : ~/R/x86_64-conda_cos6-linux-gnu-library/3.6
R_PAPERSIZE : a4
R_PDFVIEWER :
R_PLATFORM : x86_64-conda_cos6-linux-gnu
R_PRINTCMD :
R_RD4PDF : times,hyper
R_SESSION_TMPDIR : /tmp/RtmpLNh7VZ
R_SHARE_DIR : /home/matias/anaconda3/lib/R/share
R_STRIP_SHARED_LIB : x86_64-conda_cos6-linux-gnu-strip --strip-unneeded
R_STRIP_STATIC_LIB : x86_64-conda_cos6-linux-gnu-strip --strip-debug
R_SYSTEM_ABI : linux,gcc,gxx,gfortran,gfortran
R_TEXI2DVICMD : texi2dvi
R_UNZIPCMD :
R_ZIPCMD :
RANLIB : /home/matias/anaconda3/bin/x86_64-conda-linux-gnu-ranlib
READELF : /home/matias/anaconda3/bin/x86_64-conda-linux-gnu-readelf
RMARKDOWN_MATHJAX_PATH : /usr/lib/rstudio/resources/mathjax-27
RS_PPM_FD_READ : 21
RS_PPM_FD_WRITE : 22
RS_RPOSTBACK_PATH : /usr/lib/rstudio/bin/rpostback
RS_SHARED_SECRET : *** redacted ***
RSTUDIO : 1
RSTUDIO_CONSOLE_COLOR : 256
RSTUDIO_CONSOLE_WIDTH : 80
RSTUDIO_PANDOC : /usr/lib/rstudio/bin/pandoc
RSTUDIO_PROGRAM_MODE : desktop
RSTUDIO_SESSION_PORT : 26723
RSTUDIO_USER_IDENTITY : matias
RSTUDIO_WHICH_R : /home/matias/anaconda3/bin/R
RSTUDIO_WINUTILS : bin/winutils
SED : /home/matias/anaconda3/bin/sed
SESSION_MANAGER : local/samba:@/tmp/.ICE-unix/1679,unix/samba:/tmp/.ICE-unix/1679
SHELL : /bin/bash
SHLVL : 1
SIZE : /home/matias/anaconda3/bin/x86_64-conda-linux-gnu-size
SSH_AGENT_PID : 1644
SSH_AUTH_SOCK : *** redacted ***
STRINGS : /home/matias/anaconda3/bin/x86_64-conda-linux-gnu-strings
STRIP : /home/matias/anaconda3/bin/x86_64-conda-linux-gnu-strip
TAR : tar
TERM : xterm-256color
USER : matias
USERNAME : *** redacted ***
VTE_VERSION : 6003
WINDOWPATH : 2
XAUTHORITY : /run/user/1000/gdm/Xauthority
XDG_CONFIG_DIRS : /etc/xdg/xdg-ubuntu:/etc/xdg
XDG_CURRENT_DESKTOP : ubuntu:GNOME
XDG_DATA_DIRS : /usr/share/ubuntu:/usr/local/share/:/usr/share/:/var/lib/snapd/desktop
XDG_MENU_PREFIX : gnome-
XDG_RUNTIME_DIR : /run/user/1000
XDG_SESSION_CLASS : user
XDG_SESSION_DESKTOP : ubuntu
XDG_SESSION_TYPE : x11
XMODIFIERS : @im=ibus
R Version
--------------------------------------------------
platform : x86_64-conda_cos6-linux-gnu
arch : x86_64
os : linux-gnu
system : x86_64, linux-gnu
status :
major : 3
minor : 6.3
year : 2020
month : 02
day : 29
svn rev : 77875
language : R
version.string : R version 3.6.3 (2020-02-29)
nickname : Holding the Windsock
R Home
--------------------------------------------------
/home/matias/anaconda3/lib/R
R Search Path
--------------------------------------------------
.GlobalEnv
tools:rstudio
package:stats
package:graphics
package:grDevices
package:utils
package:datasets
package:methods
Autoloads
package:base
R Library Paths
--------------------------------------------------
/home/matias/anaconda3/lib/R/library
Loaded Packages
--------------------------------------------------
base : /home/matias/anaconda3/lib/R/library/base
compiler : /home/matias/anaconda3/lib/R/library/compiler
datasets : /home/matias/anaconda3/lib/R/library/datasets
graphics : /home/matias/anaconda3/lib/R/library/graphics
grDevices : /home/matias/anaconda3/lib/R/library/grDevices
methods : /home/matias/anaconda3/lib/R/library/methods
stats : /home/matias/anaconda3/lib/R/library/stats
tools : /home/matias/anaconda3/lib/R/library/tools
utils : /home/matias/anaconda3/lib/R/library/utils
Installed Packages
--------------------------------------------------
Package LibPath Version
1 backports /home/matias/anaconda3/lib/R/library 1.2.1
2 base /home/matias/anaconda3/lib/R/library 3.6.3
3 base64enc /home/matias/anaconda3/lib/R/library 0.1-3
4 compiler /home/matias/anaconda3/lib/R/library 3.6.3
5 config /home/matias/anaconda3/lib/R/library 0.3.1
6 datasets /home/matias/anaconda3/lib/R/library 3.6.3
7 digest /home/matias/anaconda3/lib/R/library 0.6.27
8 ellipsis /home/matias/anaconda3/lib/R/library 0.3.1
9 glue /home/matias/anaconda3/lib/R/library 1.4.2
10 graphics /home/matias/anaconda3/lib/R/library 3.6.3
11 grDevices /home/matias/anaconda3/lib/R/library 3.6.3
12 grid /home/matias/anaconda3/lib/R/library 3.6.3
13 jsonlite /home/matias/anaconda3/lib/R/library 1.7.2
14 lattice /home/matias/anaconda3/lib/R/library 0.20-41
15 magrittr /home/matias/anaconda3/lib/R/library 2.0.1
16 Matrix /home/matias/anaconda3/lib/R/library 1.3-2
17 methods /home/matias/anaconda3/lib/R/library 3.6.3
18 parallel /home/matias/anaconda3/lib/R/library 3.6.3
19 processx /home/matias/anaconda3/lib/R/library 3.4.5
20 ps /home/matias/anaconda3/lib/R/library 1.6.0
21 purrr /home/matias/anaconda3/lib/R/library 0.3.4
22 R6 /home/matias/anaconda3/lib/R/library 2.5.0
23 rappdirs /home/matias/anaconda3/lib/R/library 0.3.3
24 Rcpp /home/matias/anaconda3/lib/R/library 1.0.1
25 reticulate /home/matias/anaconda3/lib/R/library 1.18
26 rlang /home/matias/anaconda3/lib/R/library 0.4.10
27 rstudioapi /home/matias/anaconda3/lib/R/library 0.13
28 splines /home/matias/anaconda3/lib/R/library 3.6.3
29 stats /home/matias/anaconda3/lib/R/library 3.6.3
30 stats4 /home/matias/anaconda3/lib/R/library 3.6.3
31 tcltk /home/matias/anaconda3/lib/R/library 3.6.3
32 tensorflow /home/matias/anaconda3/lib/R/library 2.2.0
33 tfruns /home/matias/anaconda3/lib/R/library 1.5.0
34 tidyselect /home/matias/anaconda3/lib/R/library 1.1.0
35 tools /home/matias/anaconda3/lib/R/library 3.6.3
36 utils /home/matias/anaconda3/lib/R/library 3.6.3
37 vctrs /home/matias/anaconda3/lib/R/library 0.3.6
38 whisker /home/matias/anaconda3/lib/R/library 0.4
39 yaml /home/matias/anaconda3/lib/R/library 2.2.1
40 zeallot /home/matias/anaconda3/lib/R/library 0.1.0
R System Profile: /home/matias/anaconda3/lib/R/library/base/R/Rprofile
--------------------------------------------------
### This is the system Rprofile file. It is always run on startup.
### Additional commands can be placed in site or user Rprofile files
### (see ?Rprofile).
### Copyright (C) 1995-2015 The R Core Team
### Notice that it is a bad idea to use this file as a template for
### personal startup files, since things will be executed twice and in
### the wrong environment (user profiles are run in .GlobalEnv).
.GlobalEnv <- globalenv()
attach(NULL, name = "Autoloads")
.AutoloadEnv <- as.environment(2)
assign(".Autoloaded", NULL, envir = .AutoloadEnv)
T <- TRUE
F <- FALSE
R.version <- structure(R.Version(), class = "simple.list")
version <- R.version # for S compatibility
## for backwards compatibility only
R.version.string <- R.version$version.string
## NOTA BENE: options() for non-base package functionality are in places like
## --------- ../utils/R/zzz.R
options(keep.source = interactive())
options(warn = 0)
# options(repos = c(CRAN="@CRAN@"))
# options(BIOC = "http://www.bioconductor.org")
options(timeout = 60)
options(encoding = "native.enc")
options(show.error.messages = TRUE)
## keep in sync with PrintDefaults() in ../../main/print.c :
options(scipen = 0)
options(max.print = 99999)# max. #{entries} in internal printMatrix()
options(add.smooth = TRUE)# currently only used in 'plot.lm'
options(stringsAsFactors = TRUE)
if(!interactive() && is.null(getOption("showErrorCalls")))
options(showErrorCalls = TRUE)
local({dp <- Sys.getenv("R_DEFAULT_PACKAGES")
if(identical(dp, "")) ## it fact methods is done first
dp <- c("datasets", "utils", "grDevices", "graphics",
"stats", "methods")
else if(identical(dp, "NULL")) dp <- character(0)
else dp <- strsplit(dp, ",")[[1]]
dp <- sub("[[:blank:]]*([[:alnum:]]+)", "\\1", dp) # strip whitespace
options(defaultPackages = dp)
})
## Expand R_LIBS_* environment variables.
Sys.setenv(R_LIBS_SITE =
.expand_R_libs_env_var(Sys.getenv("R_LIBS_SITE")))
Sys.setenv(R_LIBS_USER =
.expand_R_libs_env_var(Sys.getenv("R_LIBS_USER")))
local({
if(nzchar(tl <- Sys.getenv("R_SESSION_TIME_LIMIT_CPU")))
setSessionTimeLimit(cpu = tl)
if(nzchar(tl <- Sys.getenv("R_SESSION_TIME_LIMIT_ELAPSED")))
setSessionTimeLimit(elapsed = tl)
})
.First.sys <- function()
{
for(pkg in getOption("defaultPackages")) {
res <- require(pkg, quietly = TRUE, warn.conflicts = FALSE,
character.only = TRUE)
if(!res)
warning(gettextf('package %s in options("defaultPackages") was not found', sQuote(pkg)),
call. = FALSE, domain = NA)
}
}
## called at C level in the startup process prior to .First.sys
.OptRequireMethods <- function()
{
pkg <- "methods" # done this way to avoid R CMD check warning
if(pkg %in% getOption("defaultPackages"))
if(!require(pkg, quietly = TRUE, warn.conflicts = FALSE,
character.only = TRUE))
warning('package "methods" in options("defaultPackages") was not found',
call. = FALSE)
}
if(nzchar(Sys.getenv("R_BATCH"))) {
.Last.sys <- function()
{
cat("> proc.time()\n")
print(proc.time())
}
## avoid passing on to spawned R processes
## A system has been reported without Sys.unsetenv, so try this
try(Sys.setenv(R_BATCH=""))
}
local({
if(nzchar(rv <- Sys.getenv("_R_RNG_VERSION_")))
suppressWarnings(RNGversion(rv))
})
###-*- R -*- Unix Specific ----
.Library <- file.path(R.home(), "library")
.Library.site <- Sys.getenv("R_LIBS_SITE")
.Library.site <- if(!nchar(.Library.site)) file.path(R.home(), "site-library") else unlist(strsplit(.Library.site, ":"))
.Library.site <- .Library.site[file.exists(.Library.site)]
invisible(.libPaths(c(unlist(strsplit(Sys.getenv("R_LIBS"), ":")),
unlist(strsplit(Sys.getenv("R_LIBS_USER"), ":")
))))
local({
popath <- Sys.getenv("R_TRANSLATIONS", "")
if(!nzchar(popath)) {
paths <- file.path(.libPaths(), "translations", "DESCRIPTION")
popath <- dirname(paths[file.exists(paths)][1])
}
bindtextdomain("R", popath)
bindtextdomain("R-base", popath)
assign(".popath", popath, .BaseNamespaceEnv)
})
local({
## we distinguish between R_PAPERSIZE as set by the user and by configure
papersize <- Sys.getenv("R_PAPERSIZE_USER")
if(!nchar(papersize)) {
lcpaper <- Sys.getlocale("LC_PAPER") # might be null: OK as nchar is 0
papersize <- if(nchar(lcpaper))
if(length(grep("(_US|_CA)", lcpaper))) "letter" else "a4"
else Sys.getenv("R_PAPERSIZE")
}
options(papersize = papersize,
printcmd = Sys.getenv("R_PRINTCMD"),
dvipscmd = Sys.getenv("DVIPS", "dvips"),
texi2dvi = Sys.getenv("R_TEXI2DVICMD"),
browser = Sys.getenv("R_BROWSER"),
pager = file.path(R.home(), "bin", "pager"),
pdfviewer = Sys.getenv("R_PDFVIEWER"),
useFancyQuotes = TRUE)
})
## non standard settings for the R.app GUI of the macOS port
if(.Platform$GUI == "AQUA") {
## this is set to let RAqua use both X11 device and X11/TclTk
if (Sys.getenv("DISPLAY") == "")
Sys.setenv("DISPLAY" = ":0")
## this is to allow gfortran compiler to work
Sys.setenv("PATH" = paste(Sys.getenv("PATH"),":/usr/local/bin",sep = ""))
}## end "Aqua"
## de-dupe the environment on macOS (bug in Yosemite which affects things like PATH)
if (grepl("^darwin", R.version$os)) local({
## we have to de-dupe one at a time and re-check since the bug affects how
## environment modifications propagate
while(length(dupes <- names(Sys.getenv())[table(names(Sys.getenv())) > 1])) {
env <- dupes[1]
value <- Sys.getenv(env)
Sys.unsetenv(env) ## removes the dupes, good
.Internal(Sys.setenv(env, value)) ## wrapper requries named vector, a pain, hence internal
}
})
local({
tests_startup <- Sys.getenv("R_TESTS")
if(nzchar(tests_startup)) source(tests_startup)
})
R Site Profile: /home/matias/anaconda3/lib/R/etc/Rprofile.site
--------------------------------------------------
(File does not exist)
R User Profile: /home/matias/.Rprofile
--------------------------------------------------
(File does not exist)
R Site Environ: /home/matias/anaconda3/lib/R/etc/Renviron.site
--------------------------------------------------
(File does not exist)
R User Environ: /home/matias/.Renviron
--------------------------------------------------
(File does not exist)
R Temporary Directory
--------------------------------------------------
/tmp/RtmpLNh7VZ
Files in R Temporary Directory
--------------------------------------------------
rs-graphics-f430d5de-0ec7-48a1-aa5e-c7ad8a8e328d
Log file: /home/matias/.local/share/rstudio/log/rdesktop.log
--------------------------------------------------
(Not Found)
Log file: /home/matias/.local/share/rstudio/log/rsession-matias.log
--------------------------------------------------
05 Mar 2021 09:41:15 [rsession-matias] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() src/cpp/session/SessionMain.cpp:1399
User prefs: /home/matias/.config/rstudio/rstudio-prefs.json
--------------------------------------------------
{
"jobs_tab_visibility": "shown"
}
System prefs: /etc/xdg/xdg-ubuntu:/etc/xdg/rstudio/rstudio-prefs.json
--------------------------------------------------
(Not Found)
User state: /home/matias/.local/share/rstudio/rstudio-desktop.json
--------------------------------------------------
{
"context_id": "6A5BDB37",
"error_handler_type": "traceback"
}