I have been using an RMarkdown parameterized report, and writing a loop to generate many outputs. This loop process was working fine. Until I updated tinytex.
Running the template for one project continues to work without incident. When I try to run the loop, the behavior of tinytex is oddly different. It begins searching to tlmgr updates. Here is the console output:
Here is the full .log file
This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded format=pdflatex 2024.2.1) 1 FEB 2024 20:56
entering extended mode
restricted \write18 enabled.
%&-line parsing enabled.
**"C:/Users/JennyThomas/OneDrive - Mitigation Holdings/Documents/RProjects/Carbon/Carbon/Project_Profiles2/2023_2H/Upper Rocky_2024_Feb_1.tex"
(c:/Users/JennyThomas/OneDrive - Mitigation Holdings/Documents/RProjects/Carbon/Carbon/Project_Profiles2/2023_2H/Upper Rocky_2024_Feb_1.tex
LaTeX2e <2023-11-01> patch level 1
L3 programming layer <2024-01-22>
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Document Class: article 2023/05/17 v1.4n Standard LaTeX document class
(c:/Users/JennyThomas/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/base/size10.clo
File: size10.clo 2023/05/17 v1.4n Standard LaTeX file (size option)
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) (c:/Users/JennyThomas/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/amsmath/amsmath.sty
Package: amsmath 2023/05/13 v2.17o AMS math features
\@mathmargin=\skip50
For additional information on amsmath, use the `?' option.
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Package: amstext 2021/08/26 v2.01 AMS text
(c:/Users/JennyThomas/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/amsmath/amsgen.sty
File: amsgen.sty 1999/11/30 v2.0 generic functions
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Package: amsbsy 1999/11/29 v1.2d Bold Symbols
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Package: amsopn 2022/04/08 v2.04 operator names
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\inf@bad=\count195
LaTeX Info: Redefining \frac on input line 234.
\uproot@=\count196
\leftroot@=\count197
LaTeX Info: Redefining \overline on input line 399.
LaTeX Info: Redefining \colon on input line 410.
\classnum@=\count198
\DOTSCASE@=\count199
LaTeX Info: Redefining \ldots on input line 496.
LaTeX Info: Redefining \dots on input line 499.
LaTeX Info: Redefining \cdots on input line 620.
\Mathstrutbox@=\box51
\strutbox@=\box52
LaTeX Info: Redefining \big on input line 722.
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\big@size=\dimen143
LaTeX Font Info: Redeclaring font encoding OML on input line 743.
LaTeX Font Info: Redeclaring font encoding OMS on input line 744.
\macc@depth=\count266
LaTeX Info: Redefining \bmod on input line 905.
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LaTeX Info: Redefining \smash on input line 940.
LaTeX Info: Redefining \relbar on input line 970.
LaTeX Info: Redefining \Relbar on input line 971.
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\mathdisplay@stack=\toks21
LaTeX Info: Redefining \[ on input line 2953.
LaTeX Info: Redefining \] on input line 2954.
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Package: amssymb 2013/01/14 v3.01 AMS font symbols
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Package: amsfonts 2013/01/14 v3.01 Basic AMSFonts support
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\symAMSb=\mathgroup5
LaTeX Font Info: Redeclaring math symbol \hbar on input line 98.
LaTeX Font Info: Overwriting math alphabet `\mathfrak' in version `bold'
(Font) U/euf/m/n --> U/euf/b/n on input line 106.
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Package: iftex 2022/02/03 v1.0f TeX engine tests
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Package: fontenc 2021/04/29 v2.0v Standard LaTeX package
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Package: inputenc 2021/02/14 v1.3d Input encoding file
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LaTeX Font Info: Overwriting symbol font `operators' in version `normal'
(Font) OT1/cmr/m/n --> OT1/lmr/m/n on input line 22.
LaTeX Font Info: Overwriting symbol font `letters' in version `normal'
(Font) OML/cmm/m/it --> OML/lmm/m/it on input line 23.
LaTeX Font Info: Overwriting symbol font `symbols' in version `normal'
(Font) OMS/cmsy/m/n --> OMS/lmsy/m/n on input line 24.
LaTeX Font Info: Overwriting symbol font `largesymbols' in version `normal'
(Font) OMX/cmex/m/n --> OMX/lmex/m/n on input line 25.
LaTeX Font Info: Overwriting symbol font `operators' in version `bold'
(Font) OT1/cmr/bx/n --> OT1/lmr/bx/n on input line 26.
LaTeX Font Info: Overwriting symbol font `letters' in version `bold'
(Font) OML/cmm/b/it --> OML/lmm/b/it on input line 27.
LaTeX Font Info: Overwriting symbol font `symbols' in version `bold'
(Font) OMS/cmsy/b/n --> OMS/lmsy/b/n on input line 28.
LaTeX Font Info: Overwriting symbol font `largesymbols' in version `bold'
(Font) OMX/cmex/m/n --> OMX/lmex/m/n on input line 29.
LaTeX Font Info: Overwriting math alphabet `\mathbf' in version `normal'
(Font) OT1/cmr/bx/n --> OT1/lmr/bx/n on input line 31.
LaTeX Font Info: Overwriting math alphabet `\mathsf' in version `normal'
(Font) OT1/cmss/m/n --> OT1/lmss/m/n on input line 32.
LaTeX Font Info: Overwriting math alphabet `\mathit' in version `normal'
(Font) OT1/cmr/m/it --> OT1/lmr/m/it on input line 33.
LaTeX Font Info: Overwriting math alphabet `\mathtt' in version `normal'
(Font) OT1/cmtt/m/n --> OT1/lmtt/m/n on input line 34.
LaTeX Font Info: Overwriting math alphabet `\mathbf' in version `bold'
(Font) OT1/cmr/bx/n --> OT1/lmr/bx/n on input line 35.
LaTeX Font Info: Overwriting math alphabet `\mathsf' in version `bold'
(Font) OT1/cmss/bx/n --> OT1/lmss/bx/n on input line 36.
LaTeX Font Info: Overwriting math alphabet `\mathit' in version `bold'
(Font) OT1/cmr/bx/it --> OT1/lmr/bx/it on input line 37.
LaTeX Font Info: Overwriting math alphabet `\mathtt' in version `bold'
(Font) OT1/cmtt/m/n --> OT1/lmtt/m/n on input line 38.
) (c:/Users/JennyThomas/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/xcolor/xcolor.sty
Package: xcolor 2023/11/15 v3.01 LaTeX color extensions (UK)
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File: color.cfg 2016/01/02 v1.6 sample color configuration
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Package xcolor Info: Driver file: pdftex.def on input line 274.
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File: pdftex.def 2022/09/22 v1.2b Graphics/color driver for pdftex
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Package xcolor Info: Model `cmy' substituted by `cmy0' on input line 1350.
Package xcolor Info: Model `hsb' substituted by `rgb' on input line 1354.
Package xcolor Info: Model `RGB' extended on input line 1366.
Package xcolor Info: Model `HTML' substituted by `rgb' on input line 1368.
Package xcolor Info: Model `Hsb' substituted by `hsb' on input line 1369.
Package xcolor Info: Model `tHsb' substituted by `hsb' on input line 1370.
Package xcolor Info: Model `HSB' substituted by `hsb' on input line 1371.
Package xcolor Info: Model `Gray' substituted by `gray' on input line 1372.
Package xcolor Info: Model `wave' substituted by `hsb' on input line 1373.
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Package: geometry 2020/01/02 v5.9 Page Geometry
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LaTeX Info: Redefining \setlength on input line 80.
LaTeX Info: Redefining \addtolength on input line 81.
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(./Upper Rocky_2024_Feb_1.out) (./Upper Rocky_2024_Feb_1.out)
\@outlinefile=\write3
\openout3 = `"Upper Rocky_2024_Feb_1.out"'.
LaTeX Font Info: Trying to load font information for OT1+lmr on input line 84.
(c:/Users/JennyThomas/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/lm/ot1lmr.fd
File: ot1lmr.fd 2015/05/01 v1.6.1 Font defs for Latin Modern
)
LaTeX Font Info: Trying to load font information for OML+lmm on input line 84.
(c:/Users/JennyThomas/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/lm/omllmm.fd
File: omllmm.fd 2015/05/01 v1.6.1 Font defs for Latin Modern
)
LaTeX Font Info: Trying to load font information for OMS+lmsy on input line 84.
(c:/Users/JennyThomas/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/lm/omslmsy.fd
File: omslmsy.fd 2015/05/01 v1.6.1 Font defs for Latin Modern
)
LaTeX Font Info: Trying to load font information for OMX+lmex on input line 84.
(c:/Users/JennyThomas/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/lm/omxlmex.fd
File: omxlmex.fd 2015/05/01 v1.6.1 Font defs for Latin Modern
)
LaTeX Font Info: External font `lmex10' loaded for size
(Font) <12> on input line 84.
LaTeX Font Info: External font `lmex10' loaded for size
(Font) <8> on input line 84.
LaTeX Font Info: External font `lmex10' loaded for size
(Font) <6> on input line 84.
LaTeX Font Info: Trying to load font information for U+msa on input line 84.
(c:/Users/JennyThomas/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/amsfonts/umsa.fd
File: umsa.fd 2013/01/14 v3.01 AMS symbols A
)
LaTeX Font Info: Trying to load font information for U+msb on input line 84.
(c:/Users/JennyThomas/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/amsfonts/umsb.fd
File: umsb.fd 2013/01/14 v3.01 AMS symbols B
)
LaTeX Font Info: External font `lmex10' loaded for size
(Font) <10> on input line 131.
LaTeX Font Info: External font `lmex10' loaded for size
(Font) <7> on input line 131.
LaTeX Font Info: External font `lmex10' loaded for size
(Font) <5> on input line 131.
LaTeX Font Info: Trying to load font information for TS1+lmr on input line 151.
(c:/Users/JennyThomas/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/lm/ts1lmr.fd
File: ts1lmr.fd 2015/05/01 v1.6.1 Font defs for Latin Modern
) [1
{c:/Users/JennyThomas/AppData/Roaming/TinyTeX/texmf-var/fonts/map/pdftex/updmap/pdftex.map}{c:/Users/JennyThomas/AppData/Roaming/TinyTeX/texmf-dist/fonts/enc/dvips/lm/lm-ec.enc}{c:/Users/JennyThomas/AppData/Roaming/TinyTeX/texmf-dist/fonts/enc/dvips/lm/lm-ts1.enc}]
! Undefined control sequence.
<argument> C:Users
JennyThomas OneDrive - Mitigation HoldingsDocuments RProj...
l.229 ...e-latex/Preserved Forest Nonsoil Curve-1}
\end{center}
Here is how much of TeX's memory you used:
11047 strings out of 476182
172687 string characters out of 5793327
1942978 words of memory out of 5000000
32860 multiletter control sequences out of 15000+600000
601477 words of font info for 75 fonts, out of 8000000 for 9000
14 hyphenation exceptions out of 8191
75i,9n,79p,566b,537s stack positions out of 10000i,1000n,20000p,200000b,200000s
! ==> Fatal error occurred, no output PDF file produced!
Solutions I have tried:
- Uninstall and reintall tinytex
- run tinytex::tlmgr_update()
- added tinytex.verbose = TRUE before trying to compile
- run just one file outside of the loop. the file with one entry does work, and does not result in teh same error message when rendering.
