I want to plot a graph using a command of goplot >goplot(a) , but on entering I got '?' in next line it was like > goplot(go_enrich_ls) ?
There was another variable (asd) where I got my plot but not in this (go_enrich_ls) variable, both variables were generated using same command of enrichGO. Please help me to resolve this error
Hi, can you provide a reproducible example? Did you enter the >? Try without it.
my data contain
head(go_enrich_ls)
ONTOLOGY ID Description GeneRatio BgRatio pvalue p.adjust qvalue
GO:0006281 BP GO:0006281 DNA repair 104/4420 343/21869 5.019489e-06 5.019489e-06 0.008050393
GO:0006302 BP GO:0006302 double-strand break repair 51/4420 143/21869 1.215743e-05 1.215743e-05 0.008050393
GO:0006974 BP GO:0006974 cellular response to DNA damage stimulus 111/4420 378/21869 1.229457e-05 1.229457e-05 0.008050393
GO:0022402 BP GO:0022402 cell cycle process 137/4420 487/21869 1.446406e-05 1.446406e-05 0.008050393
GO:0044786 BP GO:0044786 cell cycle DNA replication 29/4420 69/21869 2.982405e-05 2.982405e-05 0.011991819
GO:0006310 BP GO:0006310 DNA recombination 61/4420 186/21869 3.585543e-05 3.585543e-05 0.011991819
geneID
GO:0006281 AT3G09660/AT3G23255/AT1G31760/AT1G71260/AT4G31150/AT5G43500/AT5G18070/AT4G35110/AT4G09140/AT4G02390/AT5G66130/AT5G41150/AT2G02760/AT1G49980/AT5G07810/AT1G48580/AT3G28030/AT1G10520/AT1G55915/AT5G40840/AT1G13635/AT5G41360/AT5G50930/AT3G10140/AT5G46740/AT5G46280/AT4G00020/AT1G31360/AT3G48425/AT2G02480/AT2G16900/AT1G18340/AT1G07745/AT1G34380/AT5G64630/AT3G47830/AT3G12530/AT5G47690/AT2G35320/AT4G36050/AT4G29170/AT5G07400/AT5G24850/AT3G52050/AT4G37010/AT3G46940/AT3G25100/AT5G60370/AT3G26680/AT1G51130/AT2G18760/AT2G30350/AT4G19130/AT1G55750/AT1G52500/AT1G34770/AT1G67500/AT5G58760/AT1G04020/AT1G80810/AT1G27880/AT2G45700/AT3G57300/AT3G52560/AT2G23080/AT5G57160/AT4G00380/AT5G22010/AT4G24790/AT2G20960/AT1G14750/AT1G16970/AT3G06820/AT2G33640/AT1G80210/AT1G79950/AT4G30870/AT3G13782/AT3G02920/AT2G02740/AT5G45400/AT5G44635/AT2G36060/AT4G36280/AT3G05740/AT3G52115/AT5G49110/AT1G48360/AT3G48900/AT5G07660/AT1G63160/AT1G78870/AT5G56220/AT5G21140/AT1G48050/AT4G16265/AT1G75230/AT3G12040/AT5G48720/AT4G38560/AT5G44680/AT1G19025/AT4G02460/AT1G12400
GO:0006302 AT3G09660/AT3G23255/AT1G31760/AT5G43500/AT4G35110/AT4G02390/AT5G41150/AT1G10520/AT5G40840/AT5G46280/AT4G00020/AT1G31360/AT2G16900/AT1G07745/AT1G34380/AT5G64630/AT3G12530/AT4G29170/AT5G07400/AT3G52050/AT3G25100/AT3G26680/AT2G30350/AT4G19130/AT1G34770/AT1G67500/AT1G04020/AT1G27880/AT2G45700/AT3G57300/AT5G57160/AT4G00380/AT2G20960/AT1G14750/AT1G16970/AT3G06820/AT2G33640/AT1G80210/AT1G79950/AT4G30870/AT3G13782/AT3G02920/AT5G45400/AT5G44635/AT3G05740/AT3G52115/AT5G07660/AT5G21140/AT1G48050/AT4G38560/AT1G19025
GO:0006974 AT3G09660/AT3G23255/AT1G31760/AT1G71260/AT4G31150/AT5G43500/AT5G60870/AT5G18070/AT2G32700/AT4G35110/AT4G09140/AT4G02390/AT5G66130/AT5G41150/AT2G02760/AT1G49980/AT5G07810/AT1G48580/AT3G28030/AT1G10520/AT1G55915/AT5G40840/AT3G02860/AT1G13635/AT5G41360/AT5G50930/AT3G10140/AT5G45610/AT5G46740/AT1G16590/AT5G46280/AT4G00020/AT1G31360/AT2G31580/AT3G48425/AT2G02480/AT2G16900/AT1G18340/AT1G07745/AT1G34380/AT5G64630/AT3G47830/AT3G12530/AT5G47690/AT2G35320/AT4G36050/AT4G29170/AT5G07400/AT5G24850/AT3G52050/AT4G37010/AT3G46940/AT3G25100/AT5G60370/AT3G26680/AT1G51130/AT2G18760/AT2G30350/AT4G19130/AT1G55750/AT1G52500/AT1G34770/AT1G67500/AT5G58760/AT1G04020/AT1G80810/AT1G27880/AT2G45700/AT3G57300/AT3G52560/AT2G23080/AT5G57160/AT4G00380/AT5G22010/AT4G24790/AT2G20960/AT1G14750/AT1G16970/AT3G06820/AT2G33640/AT1G80210/AT1G79950/AT4G30870/AT3G13782/AT3G09370/AT3G02920/AT2G02740/AT5G45400/AT5G44635/AT2G36060/AT4G36280/AT3G05740/AT3G52115/AT5G49110/AT1G48360/AT3G48900/AT5G07660/AT1G63160/AT1G78870/AT5G56220/AT5G21140/AT1G48050/AT4G16265/AT1G75230/AT3G12040/AT5G48720/AT4G38560/AT5G44680/AT1G19025/AT4G02460/AT1G12400
GO:0022402 AT1G55350/AT3G09660/AT1G67370/AT2G20815/AT1G01370/AT4G15290/AT4G35620/AT2G28870/AT3G48150/AT5G03540/AT2G33793/AT4G36860/AT5G65420/AT4G35110/AT5G66130/AT5G41150/AT1G04030/AT5G67100/AT5G21150/AT5G11510/AT2G40430/AT1G13330/AT5G48390/AT3G60740/AT3G29185/AT5G43080/AT5G05970/AT3G05750/AT5G40840/AT1G08180/AT1G14350/AT3G02860/AT2G41670/AT3G24810/AT1G53490/AT5G50930/AT5G45610/AT4G37630/AT5G02420/AT3G20898/AT1G16330/AT5G46280/AT1G20930/AT2G01210/AT2G31580/AT2G44190/AT4G09550/AT3G47690/AT2G01990/AT3G20780/AT2G16900/AT4G30710/AT2G30820/AT1G07745/AT3G58650/AT5G47690/AT1G49040/AT1G06660/AT4G29170/AT4G37010/AT1G71830/AT5G05560/AT3G25100/AT1G55850/AT1G33240/AT2G33560/AT3G50630/AT3G50240/AT3G23890/AT1G22920/AT5G62500/AT3G43610/AT1G44110/AT1G80810/AT1G31810/AT5G15510/AT1G22275/AT3G53760/AT5G50375/AT2G34780/AT3G19150/AT5G22010/AT3G57860/AT1G80370/AT2G26180/AT2G46980/AT3G05330/AT2G20960/AT1G77390/AT1G14750/AT5G26290/AT2G18290/AT1G48380/AT2G02820/AT2G21770/AT2G33640/AT3G54710/AT3G63480/AT3G47460/AT1G69380/AT4G30870/AT2G27170/AT1G47570/AT4G11990/AT4G25070/AT3G61650/AT3G02820/AT1G02970/AT5G57880/AT5G04470/AT4G21530/AT5G44635/AT1G78770/AT1G61000/AT1G15110/AT3G52115/AT1G48360/AT3G25980/AT5G07660/AT1G03180/AT1G10690/AT5G03415/AT4G05190/AT5G48720/AT4G21820/AT4G38560/AT4G24710/AT1G04750/AT5G06680/AT3G02930/AT1G12790/AT1G78790/AT5G23700/AT5G48520/AT1G01690/AT1G49910/AT1G01040
GO:0044786 AT1G55350/AT2G28870/AT4G36860/AT5G67100/AT5G11510/AT1G08180/AT1G14350/AT3G02860/AT3G24810/AT4G37630/AT5G02420/AT3G20898/AT5G46280/AT3G20780/AT3G25100/AT1G33240/AT3G50630/AT2G34780/AT3G19150/AT2G18290/AT1G48380/AT2G02820/AT3G54710/AT1G69380/AT5G04470/AT5G44635/AT1G78770/AT1G10690/AT5G03415
GO:0006310 AT3G09660/AT1G67370/AT3G23255/AT1G31760/AT2G33793/AT4G35110/AT4G09140/AT5G41150/AT1G13330/AT5G48390/AT1G48580/AT5G40840/AT1G53490/AT5G50930/AT5G46280/AT4G00020/AT1G31360/AT2G16900/AT1G07745/AT5G64630/AT3G12530/AT5G47690/AT4G29170/AT3G25100/AT2G30350/AT3G23890/AT4G19130/AT1G67500/AT1G04020/AT1G80810/AT1G27880/AT3G57300/AT1G22275/AT4G00380/AT5G22010/AT2G20960/AT1G14750/AT2G33640/AT1G80210/AT1G79950/AT4G30870/AT3G13782/AT3G02920/AT5G57880/AT5G45400/AT5G44635/AT3G05740/AT3G52115/AT5G07660/AT5G56220/AT5G21140/AT1G03180/AT4G38560/AT4G24710/AT1G74350/AT3G02930/AT1G12790/AT1G78790/AT4G02460/AT5G04050/AT1G01690
Count
GO:0006281 104
GO:0006302 51
GO:0006974 111
GO:0022402 137
GO:0044786 29
GO:0006310 61
By this I want to create a goplot() using enrichplot pakage
I enter
> goplot(go_enrich_ls)
> library(enrichplot)
> head(go_enrich_ls)#mentioned in above reply
> goplot(go_enrich_ls)
gave
?
You didn't do the reprex properly.
May I know what is reprex
Reproducible example (reprex)
This topic was automatically closed 21 days after the last reply. New replies are no longer allowed.
If you have a query related to it or one of the replies, start a new topic and refer back with a link.