Rendering html outputs from r markdown in shiny app

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I am trying to use r markdown to generate a HTML document for presentation. Now when I do it using standalone that seems to be working fine. But when I use it in a shiny app that doesnt seem to be working. So far I have used this in UI

includeHTML("mkslides.html")

And in the server used this to render the markdown.

out <- render('mkslides.Rmd')

The markdown seems to be rendered when I see the console while the shiny app loads. But all I see is the HTML file without the css and js required. How can I fix this?

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