Thanks for sharing that information. I did a test installation to simulate a similar setup that you have. I used R 3.6.1 on Windows 10.
- I installed Anaconda3-2019.07-Windows-x86_64.exe
- I opened the Anaconda Prompt and updated the conda packages with
conda update --all
- I installed the tensorflow R package from GitHub and installed tensorflow into a conda environment named
tf
devtools::install_github("rstudio/tensorflow")
library(tensorflow)
install_tensorflow(envname = "tf")
I was able to run this suggested sample code from the Issue. I received warnings about the numpy version, but it was able to find tensorflow.
> library(tensorflow)
> use_condaenv("tf")
> sess <- tf$Session()
C:\Users\john\ANACON~1\envs\tf\lib\site-packages\tensorflow\python\framework\dtypes.py:516: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_qint8 = np.dtype([("qint8", np.int8, 1)])
C:\Users\john\ANACON~1\envs\tf\lib\site-packages\tensorflow\python\framework\dtypes.py:517: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_quint8 = np.dtype([("quint8", np.uint8, 1)])
C:\Users\john\ANACON~1\envs\tf\lib\site-packages\tensorflow\python\framework\dtypes.py:518: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_qint16 = np.dtype([("qint16", np.int16, 1)])
C:\Users\john\ANACON~1\envs\tf\lib\site-packages\tensorflow\python\framework\dtypes.py:519: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_quint16 = np.dtype([("quint16", np.uint16, 1)])
C:\Users\john\ANACON~1\envs\tf\lib\site-packages\tensorflow\python\framework\dtypes.py:520: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_qint32 = np.dtype([("qint32", np.int32, 1)])
C:\Users\john\ANACON~1\envs\tf\lib\site-packages\tensorflow\python\framework\dtypes.py:525: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
np_resource = np.dtype([("resource", np.ubyte, 1)])
C:\Users\john\ANACON~1\envs\tf\lib\site-packages\tensorboard\compat\tensorflow_stub\dtypes.py:541: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_qint8 = np.dtype([("qint8", np.int8, 1)])
C:\Users\john\ANACON~1\envs\tf\lib\site-packages\tensorboard\compat\tensorflow_stub\dtypes.py:542: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_quint8 = np.dtype([("quint8", np.uint8, 1)])
C:\Users\john\ANACON~1\envs\tf\lib\site-packages\tensorboard\compat\tensorflow_stub\dtypes.py:543: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_qint16 = np.dtype([("qint16", np.int16, 1)])
C:\Users\john\ANACON~1\envs\tf\lib\site-packages\tensorboard\compat\tensorflow_stub\dtypes.py:544: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_quint16 = np.dtype([("quint16", np.uint16, 1)])
C:\Users\john\ANACON~1\envs\tf\lib\site-packages\tensorboard\compat\tensorflow_stub\dtypes.py:545: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_qint32 = np.dtype([("qint32", np.int32, 1)])
C:\Users\john\ANACON~1\envs\tf\lib\site-packages\tensorboard\compat\tensorflow_stub\dtypes.py:550: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
np_resource = np.dtype([("resource", np.ubyte, 1)])
WARNING: Logging before flag parsing goes to stderr.
W0813 17:17:31.534146 27008 deprecation_wrapper.py:119] From C:\Users\john\ANACON~1\envs\tf\lib\site-packages\tensorflow\python\util\deprecation_wrapper.py:119: The name tf.Session is deprecated. Please use tf.compat.v1.Session instead.
2019-08-13 17:17:31.555172: I tensorflow/core/platform/cpu_feature_guard.cc:142] Your CPU supports instructions that this TensorFlow binary was not compiled to use: AVX2
> hello <- tf$constant('Hello, TensorFlow!')
> sess$run(hello)
b'Hello, TensorFlow!'
And here is my setup information after running the above. It seems very similar to yours:
> reticulate::conda_version()
[1] "conda 4.7.11"
> sessionInfo()
R version 3.6.1 (2019-07-05)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 17763)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.1252
[2] LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] tensorflow_1.14.0.9000
loaded via a namespace (and not attached):
[1] compiler_3.6.1 magrittr_1.5 Matrix_1.2-17
[4] tools_3.6.1 whisker_0.3-2 base64enc_0.1-3
[7] Rcpp_1.0.2 reticulate_1.13.0-9000 grid_3.6.1
[10] jsonlite_1.6 tfruns_1.4 lattice_0.20-38
Have you tried uninstalling and reinstalling Anaconda?
