Problem with citations in reference section. Only the visible ones are included in the bibliography of the chapter.

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I am building a book with bookdown in Rstudio IDE, and while it recognises that there are 6 references, at the individual chapter's references it only shows the 1st and 6th reference, which are the 'visible' ones from the brackets. I am using this citation style Zotero Style Repository

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It does however show them properly at the end chapter

Is this pandoc's bug? (I'm using pandoc 2.10.1)

R version 4.0.2 (2020-06-22)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Manjaro Linux

Matrix products: default
BLAS:   /usr/lib/libblas.so.3.9.0
LAPACK: /usr/lib/liblapack.so.3.9.0

locale:
 [1] LC_CTYPE=en_AU.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_AU.UTF-8        LC_COLLATE=en_AU.UTF-8    
 [5] LC_MONETARY=en_AU.UTF-8    LC_MESSAGES=en_AU.UTF-8   
 [7] LC_PAPER=en_AU.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_AU.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
 [1] compiler_4.0.2   bookdown_0.20    rsconnect_0.8.16 htmltools_0.5.0 
 [5] tools_4.0.2      yaml_2.2.1       rmarkdown_2.3    knitr_1.30      
 [9] xfun_0.18        digest_0.6.25    rlang_0.4.7      evaluate_0.14
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This is now being tracked here https://github.com/rstudio/bookdown/issues/962

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