Hi
I have a phyoseq object with data replicates (101a, 101b, 101c...) and I need to combine the duplicates to form a sample (all otus must be added together to form a sample). I have tried many functions (merge, combine, etc) but no headway.
Note: The samples are not in the same replicates, some are triplicates and others are in duplicates.
Can anyone please help?
Thanks.