I'm trying to run a code that uses the snowfall package. The code works when executed directly on a compute node but encounters issues when submitted as a job.
This is my error.log file
snowfall 1.84-6.3 initialized (using snow 0.4-4): parallel execution on 10 CPUs.
Warning message:
In searchCommandline(parallel, cpus = cpus, type = type, socketHosts = socketHosts, :
Unknown option on commandline: --file
I don't know what does this warning mean.
no matter how many rolling window I use the job will be timeout with no results display. When I submitted the job is these any specific requirements for the mpi job with R ? this my SLURM script
#!/bin/bash
#SBATCH --output=output.fixied.my_script.log
#SBATCH --error=error.fixied.my_script.log
#SBATCH --nodes=1 # Number of nodes requested
#SBATCH --ntasks-per-node=10 # Tasks per node
#SBATCH --time=5:00:00
module load openmpi/4.1.4/intel
module load gsl/2.7
module load R
Run R script in batch mode
mpirun --oversubscribe -n 1 Rscript papercode.R