Sure:
> install.packages("textshaping")
Installing package into ‘/sci/labs/yotamd/lab_share/avishai.wizel/R_projects/libs’
(as ‘lib’ is unspecified)
trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/2022-04-21/src/contrib/textshaping_0.3.6.tar.gz'
Content type 'binary/octet-stream' length 856819 bytes (836 KB)
==================================================
downloaded 836 KB
Welcome to HMSC project.
Attaching SeuratObject
Attaching sp
── Attaching packages ─────────────────────────────────────── tidyverse 1.3.1 ──
✔ tibble 3.1.6 ✔ dplyr 1.0.8
✔ tidyr 1.2.0 ✔ stringr 1.4.0
✔ readr 2.1.2 ✔ forcats 0.5.1
✔ purrr 0.3.4
── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::between() masks data.table::between()
✖ dplyr::first() masks data.table::first()
✖ dplyr::last() masks data.table::last()
✖ purrr::transpose() masks data.table::transpose()
Registered S3 method overwritten by 'ggtree':
method from
identify.gg ggfun
clusterProfiler v4.2.2 For help: https://yulab-smu.top/biomedical-knowledge-mining-book/
If you use clusterProfiler in published research, please cite:
T Wu, E Hu, S Xu, M Chen, P Guo, Z Dai, T Feng, L Zhou, W Tang, L Zhan, X Fu, S Liu, X Bo, and G Yu. clusterProfiler 4.0: A universal enrichment tool for interpreting omics data. The Innovation. 2021, 2(3):100141
Attaching package: ‘clusterProfiler’
The following object is masked from ‘package:purrr’:
simplify
Attaching package: ‘graphics’
The following object is masked from ‘package:sp’:
plot
Attaching package: ‘stats’
The following object is masked from ‘package:clusterProfiler’:
filter
The following objects are masked from ‘package:dplyr’:
filter, lag
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:dplyr’:
combine, intersect, setdiff, union
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Attaching package: ‘S4Vectors’
The following object is masked from ‘package:clusterProfiler’:
rename
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first, rename
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expand
The following objects are masked from ‘package:data.table’:
first, second
The following objects are masked from ‘package:base’:
I, expand.grid, unname
Attaching package: ‘IRanges’
The following object is masked from ‘package:clusterProfiler’:
slice
The following objects are masked from ‘package:dplyr’:
collapse, desc, slice
The following object is masked from ‘package:purrr’:
reduce
The following object is masked from ‘package:data.table’:
shift
The following object is masked from ‘package:sp’:
%over%
Attaching package: ‘AnnotationDbi’
The following object is masked from ‘package:clusterProfiler’:
select
The following object is masked from ‘package:dplyr’:
select
Attaching package: ‘graph’
The following object is masked from ‘package:XML’:
addNode
The following object is masked from ‘package:stringr’:
boundary
Registered S3 method overwritten by 'parameters':
method from
format.parameters_distribution datawizard
You can cite this package as:
Patil, I. (2021). Visualizations with statistical details: The 'ggstatsplot' approach.
Journal of Open Source Software, 6(61), 3167, doi:10.21105/joss.03167
Error: could not find function "cwd"
Execution halted
Warning in install.packages :
installation of package ‘textshaping’ had non-zero exit status
The downloaded source packages are in
‘/tmp/RtmpAkgr3q/downloaded_packages’
> traceback()
No traceback available