Not finding INLA package (not on CRAN) in Actions

Nathan_Green · July 4, 2022, 12:45pm

Hi,

My GitHub Actions have recently stopped working and I’m struggling to fix it.
I am using INLA and so specify an extra repo to load its package from.
I’ve updated the yaml for the latest r-lib/actions but still no luck.
I don’t know if this is an issue with pak or R 4.2 or something else.
I way even have hacked at the yaml too much now that there are multiple issues!

Any pointers would be very much appreciated!

Thanks,
Nathan

This is the workflow:

github.com

n8thangreen/BCEA/blob/6b315ed7e258055f5bee1ae85eea966cd82b1f0b/.github/workflows/check-standard.yaml

# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
  push:
    branches: [dev, main, master]
  pull_request:
    branches: [dev, main, master]

name: R-CMD-check

jobs:
  R-CMD-check:
    runs-on: ${{ matrix.config.os }}

    name: ${{ matrix.config.os }} (${{ matrix.config.r }})

    strategy:
      fail-fast: false
      matrix:
        config:

This file has been truncated. show original

and relevant part of the output (R-CMD-check · n8thangreen/BCEA@7ecc589 · GitHub):

Creating lockfile '.github/pkg.lock'
Creating lockfile '.github/pkg.lock' [19.3s]
Error: Error: <callr_remote_error: Cannot install packages:

deps::.: Can't install dependency INLA

Gabor · July 5, 2022, 3:35pm

This could be a bug in pak. Can you try specifying dependencies: TRUE instead of '"all"'?

Nathan_Green · July 12, 2022, 11:25am

Hi, thanks for the help with this. I made your suggested changes and I get the following error (changed "all" to TRUE · n8thangreen/BCEA@c28e177 · GitHub):

3s

[1]Run r-lib/actions/setup-r-dependencies@v2
[19]Run ## Installing pak
[50]Installing pak
[61]Dependency resolution
[62] Error in rs_call(self, private, func, args, package) :
[63]object 'true' not found
[64]Calls: ... -> rs_run_with_output -> -> rs_call
[65] Execution halted
[66] Error: Process completed with exit code 1.

This is the yaml:

github.com

n8thangreen/BCEA/blob/dev/.github/workflows/check-standard.yaml

# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
  push:
    branches: [dev, main, master]
  pull_request:
    branches: [dev, main, master]

name: R-CMD-check

jobs:
  R-CMD-check:
    runs-on: ${{ matrix.config.os }}

    name: ${{ matrix.config.os }} (${{ matrix.config.r }})

    strategy:
      fail-fast: false
      matrix:
        config:

This file has been truncated. show original

Thanks again!

Nathan

Gabor · July 12, 2022, 1:14pm

Right. TRUE apparently does not work. This is probably a bug in pak, I'll check it out soon.

Nathan_Green · July 27, 2022, 4:36pm

Hi Gabor, I'm just seeing if you had the chance to check out if there is a bug in pak or not? Is there anything I can do to help? Thanks again!

Gabor · July 28, 2022, 12:09pm

See the workaround here: Comparing n8thangreen:dev...gaborcsardi:dev · n8thangreen/BCEA · GitHub

system · August 5, 2022, 2:02pm

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