Interactive Shiny App

I am currently developing an interactive Shiny App that imports data from Excel sheets and generates graphs using a Bioconductor package. I have tried using plotly to make the graphs interactive, but the results have been unsatisfactory and the visual quality seems to get worse. I would appreciate any guidance or recommendations on how to create high-quality, interactive plots within Shiny.

Hi Rabro. It would be a lot easier to help if you can post a small example app which shows the problem.

An alternative to using plotly to make interactive plots though, is ggiraph.