install R version 4 fails on RHEL7


I am desperately trying to get R version 4.x on my Redhat server which only gets 3.6 through yum (EPEL does not go higher).

I tried both install from RPM and from source as detailed in the otherwise very nice Posit page Posit - Install R - Posit Documentation

In both cases, I end up with an incomplete install lacking several folders (under which library) and consequently a R command returning the following errors at start

/opt/R/4.1.3 $  ll
total 0
drwxr-xr-x. 5 root root 38 Jan  5 16:24 .
drwxr-xr-x. 3 root root 18 Jan  5 16:24 ..
drwxr-xr-x. 2 root root 28 Jan  5 16:24 bin
drwxr-xr-x. 4 root root 30 Jan  5 16:24 lib
drwxr-xr-x. 3 root root 16 Jan  5 16:24 share

Does anyone here have a way to correct this and get a full R install on RHEL? (using version 3.6 is not an option for me; neither moving to ubuntu on that server)

**/opt/R/4.1.3** $ bin/R

Error in gzfile(file, "rb") : cannot open the connection
In addition: Warning message:
In gzfile(file, "rb") :
cannot open compressed file '/usr/lib64/R/library/base/R/base.rdx', probable reason 'No such file or directory'
Error: could not find function "attach"

R version 4.1.3 (2022-03-10) -- "One Push-Up"
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Error: object '.ArgsEnv' not found
Fatal error: unable to initialize the JIT

I might have spotted something after retrying from source.

somehow, the make process is hardcoding /usr/local/lib64 as a destination, thereby ignoring the prefix /opt/R/${R_VERSION} provided during configure

./configure \
>     --prefix=/opt/R/${R_VERSION} \
>     --enable-memory-profiling \
>     --enable-R-shlib \
>     --with-blas \
>     --with-lapack

The result is that the installed R exec is looking in /usr/local/lib64 for libraries which are in fact located in /opt/R/${R_VERSION}...

I am not famliliar withj Makefiles but I suspect that there is something basically wrong there with some make steps.

I could 'fix' the issue by manually creating a symlink in /usr/lib64 pointing to the physical path /opt/R/${R_VERSION}/lib64/R/

BTW in that location, I find all the expected folders for a normal install including the library folder, they are just deeply nested inside the install folder, in my case the actuall files are in /opt/R/${R_VERSION}/lib64/R/ which is not the usual behaviour like under ubuntu

ll /opt/R/4.1.3/lib64/R/
total 48K
drwxr-xr-x. 10 root root 4.0K Jan  5 18:01 .
drwxr-xr-x.  4 root root   30 Jan  5 18:01 ..
drwxr-xr-x.  3 root root 4.0K Jan  5 18:01 bin
-rw-r--r--.  1 root root  18K Jan  5 18:01 COPYING
drwxr-xr-x.  4 root root 4.0K Jan  5 18:01 doc
drwxr-xr-x.  2 root root   84 Jan  5 18:01 etc
drwxr-xr-x.  3 root root 4.0K Jan  5 18:01 include
drwxr-xr-x.  2 root root   20 Jan  5 18:01 lib
drwxr-xr-x. 32 root root 4.0K Jan  5 18:01 library
drwxr-xr-x.  2 root root   69 Jan  5 18:01 modules
drwxr-xr-x. 11 root root 4.0K Jan  5 18:01 share
-rw-r--r--.  1 root root   46 Jan  5 18:01 SVN-REVISION

Hope this will give good ideas to someone more qualified than me to fix the RHEL makefile of R version 4.1.3!!

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