Hi,
I would like to report the rendering issue that accompanies me troughout my whole RStudio experience. No matter to computer or rendering engine or GPU setting, there are ugly lines in a pop-ups (as seen when swithing projects, e.g.). This is clearly shown in the screenshot below:
Here I append RStudio diag report. Note that using macOS, there is no such issue. Thank you in advance!
RStudio Diagnostics Report
==========================
WARNING: This report may contain sensitive security information and / or
personally identifiable information. Please audit the below and redact any
sensitive information before submitting your diagnostics report.
Generated: Wed May 20 10:37:24 2020
RStudio Version
--------------------------------------------------
1.3.959
Session Information
--------------------------------------------------
R version 4.0.0 (2020-04-24)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 18363)
Matrix products: default
locale:
[1] LC_COLLATE=Czech_Czechia.1250 LC_CTYPE=Czech_Czechia.1250
[3] LC_MONETARY=Czech_Czechia.1250 LC_NUMERIC=C
[5] LC_TIME=Czech_Czechia.1250
attached base packages:
[1] stats graphics grDevices datasets utils methods base
loaded via a namespace (and not attached):
[1] compiler_4.0.0 tools_4.0.0 renv_0.9.3
System Information
--------------------------------------------------
sysname : Windows
release : 10 x64
version : build 18363
nodename : DESKTOP-HJQMO9U
machine : x86-64
login : netik
user : netik
effective_user : netik
Platform Information
--------------------------------------------------
OS.type : windows
file.sep : /
dynlib.ext : .dll
GUI : RStudio
endian : little
pkgType : win.binary
path.sep : ;
r_arch : x64
Environment Variables
--------------------------------------------------
ALLUSERSPROFILE : C:\ProgramData
APPDATA : C:\Users\netik\AppData\Roaming
CLICOLOR_FORCE : 1
CommonProgramFiles : C:\Program Files\Common Files
CommonProgramFiles(x86) : C:\Program Files (x86)\Common Files
CommonProgramW6432 : C:\Program Files\Common Files
COMPUTERNAME : DESKTOP-xxxxxxxx
ComSpec : C:\Windows\system32\cmd.exe
DISPLAY : :0
DriverData : C:\Windows\System32\Drivers\DriverData
GFORTRAN_STDERR_UNIT : -1
GFORTRAN_STDOUT_UNIT : -1
HOME : C:\Users\netik\Documents
HOMEDRIVE : C:
HOMEPATH : \Users\netik
LOCALAPPDATA : C:\Users\netik\AppData\Local
LOGONSERVER : \\DESKTOP-xxxxxxxx
MPLENGINE : tkAgg
MSYS2_ENV_CONV_EXCL : R_ARCH
NUMBER_OF_PROCESSORS : 8
OneDrive : C:\Users\netik\OneDrive
OneDriveConsumer : C:\Users\netik\OneDrive
OS : Windows_NT
PATH : C:\Program Files\R\R-4.0.0\bin\x64;C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0\;C:\Windows\System32\OpenSSH\;C:\Program Files\Git\cmd;C:\Users\netik\AppData\Local\Microsoft\WindowsApps;C:\Users\netik\AppData\Local\GitHubDesktop\bin
PATHEXT : .COM;.EXE;.BAT;.CMD;.VBS;.VBE;.JS;.JSE;.WSF;.WSH;.MSC
PROCESSOR_ARCHITECTURE : AMD64
PROCESSOR_IDENTIFIER : Intel64 Family 6 Model 126 Stepping 5, GenuineIntel
PROCESSOR_LEVEL : 6
PROCESSOR_REVISION : 7e05
ProgramData : C:\ProgramData
ProgramFiles : C:\Program Files
ProgramFiles(x86) : C:\Program Files (x86)
ProgramW6432 : C:\Program Files
PSModulePath : C:\Program Files\WindowsPowerShell\Modules;C:\Windows\system32\WindowsPowerShell\v1.0\Modules
PUBLIC : C:\Users\Public
QT_D3DCREATE_MULTITHREADED : 1
R_ARCH : /x64
R_COMPILED_BY : gcc 8.3.0
R_DOC_DIR : C:/PROGRA~1/R/R-4.0.0/doc
R_HOME : C:/PROGRA~1/R/R-4.0.0
R_LIBS_USER : C:/Users/netik/Documents/GitHub/buildr/renv/library/R-4.0/x86_64-w64-mingw32;C:/Users/netik/AppData/Local/Temp/Rtmpq0t2DD/renv-system-library
R_USER : C:/Users/netik/Documents
RENV_DEFAULT_R_ENVIRON : <NA>
RENV_DEFAULT_R_ENVIRON_USER : <NA>
RENV_DEFAULT_R_LIBS : <NA>
RENV_DEFAULT_R_LIBS_SITE : <NA>
RENV_DEFAULT_R_LIBS_USER : C:/Users/netik/Documents/R/win-library/4.0
RENV_DEFAULT_R_PROFILE : <NA>
RENV_DEFAULT_R_PROFILE_USER : <NA>
RENV_PROJECT : C:/Users/netik/Documents/GitHub/buildr
RETICULATE_MINICONDA_PYTHON_ENVPATH : C:/Users/netik/Documents/GitHub/buildr/renv/python/r-reticulate
RMARKDOWN_MATHJAX_PATH : C:/Program Files/RStudio/resources/mathjax-27
RS_LOCAL_PEER : \\.\pipe\36328-rsession
RS_RPOSTBACK_PATH : C:/Program Files/RStudio/bin/rpostback
RS_SHARED_SECRET : *** redacted ***
RSTUDIO : 1
RSTUDIO_CONSOLE_COLOR : 256
RSTUDIO_CONSOLE_WIDTH : 80
RSTUDIO_MSYS_SSH : C:/Program Files/RStudio/bin/msys-ssh-1000-18
RSTUDIO_PANDOC : C:/Program Files/RStudio/bin/pandoc
RSTUDIO_PROGRAM_MODE : desktop
RSTUDIO_SESSION_PORT : 36328
RSTUDIO_USER_IDENTITY : netik
RSTUDIO_WINUTILS : C:/Program Files/RStudio/bin/winutils
RTOOLS40_HOME : C:\rtools40
SESSIONNAME : Console
SystemDrive : C:
SystemRoot : C:\Windows
TEMP : C:\Users\netik\AppData\Local\Temp
TERM : xterm-256color
TMP : C:\Users\netik\AppData\Local\Temp
USERDOMAIN : DESKTOP-xxxxxxx
USERDOMAIN_ROAMINGPROFILE : DESKTOP-xxxxxxx
USERNAME : *** redacted ***
USERPROFILE : C:\Users\netik
windir : C:\Windows
R Version
--------------------------------------------------
platform : x86_64-w64-mingw32
arch : x86_64
os : mingw32
system : x86_64, mingw32
status :
major : 4
minor : 0.0
year : 2020
month : 04
day : 24
svn rev : 78286
language : R
version.string : R version 4.0.0 (2020-04-24)
nickname : Arbor Day
R Home
--------------------------------------------------
C:/PROGRA~1/R/R-4.0.0
R Search Path
--------------------------------------------------
.GlobalEnv
tools:rstudio
package:stats
package:graphics
package:grDevices
package:datasets
renv:shims
package:utils
package:methods
Autoloads
package:base
R Library Paths
--------------------------------------------------
C:/Users/netik/Documents/GitHub/buildr/renv/library/R-4.0/x86_64-w64-mingw32
C:/Users/netik/AppData/Local/Temp/Rtmpq0t2DD/renv-system-library
Loaded Packages
--------------------------------------------------
compiler : C:/Program Files/R/R-4.0.0/library/compiler
datasets : C:/Program Files/R/R-4.0.0/library/datasets
graphics : C:/Program Files/R/R-4.0.0/library/graphics
grDevices : C:/Program Files/R/R-4.0.0/library/grDevices
methods : C:/Program Files/R/R-4.0.0/library/methods
stats : C:/Program Files/R/R-4.0.0/library/stats
tools : C:/Program Files/R/R-4.0.0/library/tools
utils : C:/Program Files/R/R-4.0.0/library/utils
renv : C:/Users/netik/Documents/GitHub/buildr/renv/library/R-4.0/x86_64-w64-mingw32/renv
base : C:\Users\netik\AppData\Local\Temp\Rtmpq0t2DD/renv-system-library/base
Installed Packages
--------------------------------------------------
Package LibPath Version
1 renv C:/Users/netik/Documents/GitHub/buildr/renv/library/R-4.0/x86_64-w64-mingw32 0.9.3
2 base C:/Users/netik/AppData/Local/Temp/Rtmpq0t2DD/renv-system-library 4.0.0
3 boot C:/Users/netik/AppData/Local/Temp/Rtmpq0t2DD/renv-system-library 1.3-24
4 class C:/Users/netik/AppData/Local/Temp/Rtmpq0t2DD/renv-system-library 7.3-16
5 cluster C:/Users/netik/AppData/Local/Temp/Rtmpq0t2DD/renv-system-library 2.1.0
6 codetools C:/Users/netik/AppData/Local/Temp/Rtmpq0t2DD/renv-system-library 0.2-16
7 compiler C:/Users/netik/AppData/Local/Temp/Rtmpq0t2DD/renv-system-library 4.0.0
8 datasets C:/Users/netik/AppData/Local/Temp/Rtmpq0t2DD/renv-system-library 4.0.0
9 foreign C:/Users/netik/AppData/Local/Temp/Rtmpq0t2DD/renv-system-library 0.8-78
10 graphics C:/Users/netik/AppData/Local/Temp/Rtmpq0t2DD/renv-system-library 4.0.0
11 grDevices C:/Users/netik/AppData/Local/Temp/Rtmpq0t2DD/renv-system-library 4.0.0
12 grid C:/Users/netik/AppData/Local/Temp/Rtmpq0t2DD/renv-system-library 4.0.0
13 KernSmooth C:/Users/netik/AppData/Local/Temp/Rtmpq0t2DD/renv-system-library 2.23-16
14 lattice C:/Users/netik/AppData/Local/Temp/Rtmpq0t2DD/renv-system-library 0.20-41
15 MASS C:/Users/netik/AppData/Local/Temp/Rtmpq0t2DD/renv-system-library 7.3-51.5
16 Matrix C:/Users/netik/AppData/Local/Temp/Rtmpq0t2DD/renv-system-library 1.2-18
17 methods C:/Users/netik/AppData/Local/Temp/Rtmpq0t2DD/renv-system-library 4.0.0
18 mgcv C:/Users/netik/AppData/Local/Temp/Rtmpq0t2DD/renv-system-library 1.8-31
19 nlme C:/Users/netik/AppData/Local/Temp/Rtmpq0t2DD/renv-system-library 3.1-147
20 nnet C:/Users/netik/AppData/Local/Temp/Rtmpq0t2DD/renv-system-library 7.3-13
21 parallel C:/Users/netik/AppData/Local/Temp/Rtmpq0t2DD/renv-system-library 4.0.0
22 rpart C:/Users/netik/AppData/Local/Temp/Rtmpq0t2DD/renv-system-library 4.1-15
23 spatial C:/Users/netik/AppData/Local/Temp/Rtmpq0t2DD/renv-system-library 7.3-11
24 splines C:/Users/netik/AppData/Local/Temp/Rtmpq0t2DD/renv-system-library 4.0.0
25 stats C:/Users/netik/AppData/Local/Temp/Rtmpq0t2DD/renv-system-library 4.0.0
26 stats4 C:/Users/netik/AppData/Local/Temp/Rtmpq0t2DD/renv-system-library 4.0.0
27 survival C:/Users/netik/AppData/Local/Temp/Rtmpq0t2DD/renv-system-library 3.1-12
28 tcltk C:/Users/netik/AppData/Local/Temp/Rtmpq0t2DD/renv-system-library 4.0.0
29 tools C:/Users/netik/AppData/Local/Temp/Rtmpq0t2DD/renv-system-library 4.0.0
30 utils C:/Users/netik/AppData/Local/Temp/Rtmpq0t2DD/renv-system-library 4.0.0
R System Profile: C:/PROGRA~1/R/R-4.0.0/library/base/R/Rprofile
--------------------------------------------------
### This is the system Rprofile file. It is always run on startup.
### Additional commands can be placed in site or user Rprofile files
### (see ?Rprofile).
### Copyright (C) 1995-2015 The R Core Team
### Notice that it is a bad idea to use this file as a template for
### personal startup files, since things will be executed twice and in
### the wrong environment (user profiles are run in .GlobalEnv).
.GlobalEnv <- globalenv()
attach(NULL, name = "Autoloads")
.AutoloadEnv <- as.environment(2)
assign(".Autoloaded", NULL, envir = .AutoloadEnv)
T <- TRUE
F <- FALSE
R.version <- structure(R.Version(), class = "simple.list")
version <- R.version # for S compatibility
## for backwards compatibility only
R.version.string <- R.version$version.string
## NOTA BENE: options() for non-base package functionality are in places like
## --------- ../utils/R/zzz.R
options(keep.source = interactive())
options(warn = 0)
# options(repos = c(CRAN="@CRAN@"))
# options(BIOC = "http://www.bioconductor.org")
options(timeout = 60)
options(encoding = "native.enc")
options(show.error.messages = TRUE)
## keep in sync with PrintDefaults() in ../../main/print.c :
options(scipen = 0)
options(max.print = 99999)# max. #{entries} in internal printMatrix()
options(add.smooth = TRUE)# currently only used in 'plot.lm'
if(isFALSE(as.logical(Sys.getenv("_R_OPTIONS_STRINGS_AS_FACTORS_",
"FALSE")))) {
options(stringsAsFactors = FALSE)
} else {
options(stringsAsFactors = TRUE)
}
if(!interactive() && is.null(getOption("showErrorCalls")))
options(showErrorCalls = TRUE)
local({dp <- Sys.getenv("R_DEFAULT_PACKAGES")
if(identical(dp, "")) ## it fact methods is done first
dp <- c("datasets", "utils", "grDevices", "graphics",
"stats", "methods")
else if(identical(dp, "NULL")) dp <- character(0)
else dp <- strsplit(dp, ",")[[1]]
dp <- sub("[[:blank:]]*([[:alnum:]]+)", "\\1", dp) # strip whitespace
options(defaultPackages = dp)
})
## Expand R_LIBS_* environment variables.
Sys.setenv(R_LIBS_SITE =
.expand_R_libs_env_var(Sys.getenv("R_LIBS_SITE")))
Sys.setenv(R_LIBS_USER =
.expand_R_libs_env_var(Sys.getenv("R_LIBS_USER")))
local({
if(nzchar(tl <- Sys.getenv("R_SESSION_TIME_LIMIT_CPU")))
setSessionTimeLimit(cpu = tl)
if(nzchar(tl <- Sys.getenv("R_SESSION_TIME_LIMIT_ELAPSED")))
setSessionTimeLimit(elapsed = tl)
})
.First.sys <- function()
{
for(pkg in getOption("defaultPackages")) {
res <- require(pkg, quietly = TRUE, warn.conflicts = FALSE,
character.only = TRUE)
if(!res)
warning(gettextf('package %s in options("defaultPackages") was not found', sQuote(pkg)),
call. = FALSE, domain = NA)
}
}
## called at C level in the startup process prior to .First.sys
.OptRequireMethods <- function()
{
pkg <- "methods" # done this way to avoid R CMD check warning
if(pkg %in% getOption("defaultPackages"))
if(!require(pkg, quietly = TRUE, warn.conflicts = FALSE,
character.only = TRUE))
warning('package "methods" in options("defaultPackages") was not found',
call. = FALSE)
}
if(nzchar(Sys.getenv("R_BATCH"))) {
.Last.sys <- function()
{
cat("> proc.time()\n")
print(proc.time())
}
## avoid passing on to spawned R processes
## A system has been reported without Sys.unsetenv, so try this
try(Sys.setenv(R_BATCH=""))
}
local({
if(nzchar(rv <- Sys.getenv("_R_RNG_VERSION_")))
suppressWarnings(RNGversion(rv))
})
###-*- R -*-
## this will break if R is on a network share
.Library <- file.path(chartr("\\", "/", R.home()), "library")
.Library.site <- Sys.getenv("R_LIBS_SITE")
.Library.site <- if(!nchar(.Library.site)) file.path(R.home(), "site-library") else unlist(strsplit(.Library.site, ";"))
.Library.site <- .Library.site[file.exists(.Library.site)]
if(!nzchar(Sys.getenv("R_LIBS_USER")))
Sys.setenv(R_LIBS_USER=
file.path(Sys.getenv("R_USER"), "R",
"win-library",
paste(R.version$major,
sub("\\..*$", "", R.version$minor),
sep=".")
))
invisible(.libPaths(c(unlist(strsplit(Sys.getenv("R_LIBS"), ";")),
unlist(strsplit(Sys.getenv("R_LIBS_USER"), ";"))
)))
local({
popath <- Sys.getenv("R_TRANSLATIONS", "")
if(!nzchar(popath)) {
paths <- file.path(.libPaths(), "translations", "DESCRIPTION")
popath <- dirname(paths[file.exists(paths)][1])
}
bindtextdomain("R", popath)
bindtextdomain("R-base", popath)
bindtextdomain("RGui", popath)
assign(".popath", popath, .BaseNamespaceEnv)
})
if(nzchar(Sys.getenv("R_PAPERSIZE"))) {
options(papersize = Sys.getenv("R_PAPERSIZE"))
} else {
if(grepl("(canada|united.states)", Sys.getlocale("LC_MONETARY"),
ignore.case = TRUE)) options(papersize = "letter")
else options(papersize = "a4")
}
options(pager = if(length(grep("--ess", commandArgs()))) "console" else "internal",
useFancyQuotes = (.Platform$GUI == "Rgui"),
pdfviewer = Sys.getenv("R_PDFVIEWER", file.path(R.home("bin"), "open.exe")))
if(.Platform$GUI == "Rgui")
Sys.setenv(GFORTRAN_STDOUT_UNIT = "-1", GFORTRAN_STDERR_UNIT = "-1")
local({
br <- Sys.getenv("R_BROWSER", NA_character_)
if(!is.na(br)) options(browser = br)
tests_startup <- Sys.getenv("R_TESTS")
if(nzchar(tests_startup)) source(tests_startup)
ca_cert <- Sys.getenv("CURL_CA_BUNDLE", NA_character_)
if(!is.na(ca_cert) &&
file.exists(ca_path <- file.path(R.home("etc"), "curl-ca-bundle.crt")))
Sys.setenv(CURL_CA_BUNDLE = ca_path)
})
R Site Profile: C:/PROGRA~1/R/R-4.0.0/etc/Rprofile.site
--------------------------------------------------
# Things you might want to change
# options(papersize="a4")
# options(editor="notepad")
# options(pager="internal")
# set the default help type
# options(help_type="text")
options(help_type="html")
# set a site library
# .Library.site <- file.path(chartr("\\", "/", R.home()), "site-library")
# set a CRAN mirror
# local({r <- getOption("repos")
# r["CRAN"] <- "http://my.local.cran"
# options(repos=r)})
# Give a fortune cookie, but only to interactive sessions
# (This would need the fortunes package to be installed.)
# if (interactive())
# fortunes::fortune()
R User Profile: C:/Users/netik/Documents/.Rprofile
--------------------------------------------------
(File does not exist)
R Site Environ: C:/PROGRA~1/R/R-4.0.0/etc/Renviron.site
--------------------------------------------------
(File does not exist)
R User Environ: C:/Users/netik/Documents/.Renviron
--------------------------------------------------
(File does not exist)
R Temporary Directory
--------------------------------------------------
C:\Users\netik\AppData\Local\Temp\Rtmpq0t2DD
Files in R Temporary Directory
--------------------------------------------------
libloc_180_84b6a54.rds
renv-system-library
rs-graphics-79e7adf6-4804-4ac2-a4e6-9b0cb62b36d6
Log file: C:/Users/netik/AppData/Local/RStudio-Desktop/log/rdesktop.log
--------------------------------------------------
(Not Found)
Log file: C:/Users/netik/AppData/Local/RStudio-Desktop/log/rsession-netik.log
--------------------------------------------------
20 May 2020 08:37:24 [rstudio-diagnostics] ERROR system error 32 (Proces nemá přístup k souboru, neboť jej právě využívá jiný proces) [path: C:/Users/netik/AppData/Local/RStudio-Desktop/log/rsession-netik.log]; OCCURRED AT auto __cdecl rstudio::core::FilePath::openForRead::<lambda_08754985928f41bffddcf4ccb546a6bb>::operator ()(void) const src/cpp/shared_core/FilePath.cpp:1134; LOGGED FROM: void __cdecl `anonymous-namespace'::writeFile(const class std::basic_string<char,struct std::char_traits<char>,class std::allocator<char> > &,const class rstudio::core::FilePath &,class std::basic_ostream<char,struct std::char_traits<char> > &) src/cpp/diagnostics/DiagnosticsMain.cpp:63
(Empty)
User prefs: C:/Users/netik/AppData/Roaming/RStudio/rstudio-prefs.json
--------------------------------------------------
{
"panes": {
"quadrants": [
"Source",
"Console",
"TabSet1",
"TabSet2"
],
"tabSet1": [
"Environment",
"Files",
"Connections",
"Build",
"VCS",
"Tutorial",
"Presentation"
],
"tabSet2": [
"History",
"Plots",
"Packages",
"Help",
"Viewer"
],
"console_left_on_top": false,
"console_right_on_top": true
},
"editor_theme": "Merbivore",
"windows_terminal_shell": "win-git-bash",
"style_diagnostics": true,
"jobs_tab_visibility": "shown"
}
System prefs: C:/ProgramData/RStudio/rstudio-prefs.json
--------------------------------------------------
(Not Found)
User state: C:/Users/netik/AppData/Local/RStudio/rstudio-desktop.json
--------------------------------------------------
{
"context_id": "BDDC4978",
"theme": {
"name": "Merbivore",
"url": "theme/default/merbivore.rstheme",
"isDark": true
},
"error_handler_type": "traceback"
}