Hi I have two dataframes. Reproducible examples:
dataframe:1
data.frame(
stringsAsFactors = FALSE,
Bacteria = c("Acidaminococcus_intestini",
"Akkermansia_muciniphila","Alistipes_indistinctus",
"Alistipes_inops","Alistipes_putredinis","Alistipes_shahii"),
estimate = c(-0.366771565396125,
0.553631680677047,0.508522403813429,0.374210897216381,
0.469470874555095,0.542879858475023),
se = c(0.172956113013377,
0.140510650137267,0.139978598302408,0.139596632663061,
0.139801942041036,0.141394831899225),
country = c("metaanalysis","metaanalysis",
"metaanalysis","metaanalysis","metaanalysis",
"metaanalysis")
)
dataframe:2
data.frame(
stringsAsFactors = FALSE,
Bacteria = c("Acidaminococcus_intestini",
"Actinomyces_odontolyticus","Actinomyces_sp_HPA0247",
"Actinomyces_sp_ICM47","Adlercreutzia_equolifaciens",
"Agathobaculum_butyriciproducens"),
estimate = c(-0.19433268440639,
0.117836468006733,-0.256617985612771,-0.431658784453513,
-0.0479365516909252,-0.139033057208901),
se = c(0.0832977360987506,
0.0830681230310939,0.0835678091594368,0.0847262371945899,
0.0829567045675912,0.0831204764715223),
country = c("erp002469","erp002469",
"erp002469","erp002469","erp002469","erp002469")
)
The two datasets are different except for some Bacteria
names common among the two. Now, I want a subset of the second dataframe where only those Bacteria will be present who are common with the first dataframe.
which means I will have only the first row as an output from the second dataset
Bacteria estimate se country
1 Acidaminococcus_intestini -0.1943327 0.08329774 erp002469
Can anyone please help me?
thanks,
DC