Hello everyone!
Here's my data style, but I won't build a multicomponent violin diagram:
| group | Clade | Insertion_Time |
|---|---|---|
| group2 | Tork | 853185 |
| group2 | Athila | 379312 |
| group2 | Retand | 1130063 |
| group2 | Tekay | 255525 |
| group2 | Athila | 239886 |
| group2 | Ale | 0 |
| group2 | Ale | 0 |
| group2 | Ogre | 41610 |
| group2 | Athila | 431352 |
| group2 | TAR | 0 |
| group2 | Ogre | 338127 |
| group2 | Retand | 372729 |
| group2 | Ale | 767998 |
| group2 | Ale | 270223 |
| group2 | TAR | 36273 |
| group2 | Ogre | 488782 |
| group2 | Tekay | 1319446 |
| group2 | Angela | 473732 |
| group2 | Retand | 0 |
| group2 | Tork | 486354 |
| group2 | Iva0 | 1245755 |
| group2 | Tekay | 255688 |
| group2 | Retand | 327799 |
| group2 | Tork | 494165 |
| group2 | Tekay | 162057 |
| group2 | Retand | 477599 |
| group2 | Ale | 190091 |
| group2 | Athila | 551171 |
| group2 | Ogre | 1917981 |
| group2 | Retand | 593767 |
| group2 | Tork | 93278 |
| group2 | Tork | 363996 |
| group2 | Retand | 1781190 |
| group2 | Ale | 678763 |
| group2 | Ale | 213280 |
| group2 | SIRE | 1247590 |
| group2 | Ale | 0 |
| group2 | TAR | 731977 |
| group2 | Retand | 215069 |
| group2 | Athila | 24889 |
| group2 | Ogre | 749291 |
| group2 | TAR | 120068 |
| group2 | Athila | 0 |
| group2 | CRM | 2129153 |
| group2 | Ogre | 215191 |
| group2 | Retand | 248248 |
| group2 | Tekay | 255379 |
| group2 | Tekay | 68154 |
| group2 | Tekay | 18533 |
| group2 | Tork | 0 |
| group2 | Tekay | 415309 |
| group2 | TAR | 1749697 |
| group2 | Athila | 27844 |
| group2 | Ale | 262836 |
| group2 | Ale | 0 |
| group2 | Athila | 312612 |
| group2 | Ikeros | 398434 |
...
| group4 | TAR | 1823419 |
|---|---|---|
| group4 | SIRE | 0 |
| group4 | Ale | 252485 |
| group4 | Retand | 1042084 |
| group4 | Athila | 0 |
| group4 | Athila | 361713 |
| group4 | Athila | 74877 |
| group4 | Ale | 287386 |
| group4 | Retand | 666031 |
| group4 | Athila | 1248786 |
| group4 | Iva0 | 299702 |
| group4 | TAR | 51742 |
| group4 | Athila | 54880 |
| group4 | Athila | 119843 |
| group4 | Athila | 481182 |
| group4 | Tekay | 213428 |
| group4 | TAR | 572446 |
| group4 | SIRE | 66218 |
| group4 | Retand | 188692 |
| group4 | Retand | 212497 |
| group4 | Iva0 | 176565 |
| group4 | Tork | 850561 |
| group4 | Ogre | 1327321 |
| group4 | Tekay | 103632 |
| group4 | CRM | 212104 |
| group4 | Bianca | 0 |
| group4 | Ogre | 69321 |
| group4 | Ale | 1762144 |
| group4 | CRM | 1354523 |
| group4 | Retand | 254490 |
| group4 | Tekay | 48177 |
| group4 | Tekay | 0 |
| group4 | CRM | 0 |
| group4 | Retand | 50853 |
| group4 | Ale | 276042 |
| group4 | Ale | 219363 |
| group4 | Athila | 221896 |
| group4 | CRM | 0 |
| group4 | Ale | 148884 |
| group4 | Angela | 28026 |
| group4 | Tork | 0 |
| group4 | Athila | 129182 |
| group4 | Angela | 206045 |
| group4 | TAR | 238769 |
| group4 | CRM | 1364136 |
| group4 | Iva0 | 281428 |
| group4 | Tork | 723907 |
| group4 | Ikeros | 78280 |
| group4 | Retand | 0 |
| group4 | Tekay | 0 |
| group4 | Tork | 303646 |
| group4 | Ikeros | 394351 |
| group4 | Athila | 170561 |
| group4 | Tork | 0 |
| group4 | Tork | 245240 |
| group4 | SIRE | 370867 |
| group4 | Athila | 0 |
| group4 | CRM | 409171 |
| group4 | Retand | 918903 |
| group4 | Galadriel | 2588420 |
| group4 | Ogre | 170991 |
| group4 | Iva0 | 352595 |
| group4 | Athila | 357830 |
| group4 | Athila | 350554 |
| group4 | Ogre | 54452 |
| group4 | TAR | 423770 |
| group4 | TAR | 123539 |
| group4 | Ogre | 2004199 |
| group4 | Athila | 0 |
| group4 | Tork | 1556622 |
| group4 | Tekay | 20487 |
| group4 | Athila | 641308 |
| group4 | Athila | 24338 |
| group4 | Ogre | 0 |
| group4 | Ikeros | 83733 |
| group4 | SIRE | 164272 |
| group4 | Athila | 57505 |
| group4 | Athila | 28760 |
| group4 | Athila | 274858 |
| group4 | Ikeros | 1182380 |
| group4 | Tekay | 645533 |
| group4 | Tekay | 345856 |
| group4 | Tekay | 250372 |
| group4 | Ogre | 554278 |
| group4 | Ale | 0 |
| group4 | SIRE | 99987 |
| group4 | Tekay | 329297 |
| group4 | Ale | 1113891 |
| group4 | Ogre | 729401 |
| group4 | Tork | 795808 |
| group4 | Ale | 854765 |
| group4 | Ale | 229850 |
| group4 | Ogre | 31034 |
| group4 | Ogre | 1656153 |
| group4 | Ale | 0 |
| group4 | Ale | 0 |
| group4 | CRM | 0 |
| group4 | Athila | 115298 |
| group4 | Ale | 173772 |
| group4 | Athila | 0 |
| group4 | TAR | 830165 |
| group4 | Ikeros | 337138 |
| group4 | Retand | 301111 |
| group4 | Iva0 | 0 |
| group4 | Ogre | 1328958 |
| group4 | Iva0 | 2205055 |
| group4 | TAR | 274075 |
| group4 | Ogre | 138328 |
| group4 | Retand | 0 |
| group4 | Tekay | 191620 |
| group4 | Athila | 19843 |
| group4 | Athila | 318665 |
| group4 | Athila | 140713 |
| group4 | Tork | 424606 |
| group4 | Ale | 1357715 |
| group4 | Retand | 2887027 |
| group4 | Ale | 725725 |
| group4 | Tork | 70919 |
| group4 | Ogre | 634225 |
| group4 | Retand | 303966 |
| group4 | Retand | 210941 |
| group4 | Ale | 1602976 |
| group4 | Athila | 30590 |
| group4 | Athila | 2345184 |
| group4 | Athila | 508315 |
| group4 | Athila | 1189707 |
| group4 | Ale | 656552 |
| group4 | Ale | 442945 |
| group4 | Iva0 | 143336 |
| group4 | Ale | 288463 |
| group4 | Ogre | 0 |
| group4 | CRM | 329910 |
| ... |
The number of groups varies from group to group. The final build should look something like this:
I will build a violin diagram for the individual groups, with the code listed below. But I don't know how to fuse the components together.
library(ggplot2)
library(ggsci)
library(hrbrthemes)
library(RColorBrewer)
data <-read.csv("insertion.csv")
insertion.csv
ggplot(data, aes(x = Clade, y = Insertion_Time, col = Clade),
show.legend = F) +
geom_violin() +
geom_boxplot(width = 0.2) +
geom_jitter(width = 0.2, col = "black") +
guides(col = F) -> p
p +
theme( axis.line = element_line(color = "black", size = 0.2),
axis.title = element_text(size = 12),
axis.text = element_text(size = 10),
axis.ticks = element_line(colour = "grey"),
panel.background = element_blank(),
panel.border = element_rect(fill = NA, size = 0.3),
panel.grid.major = element_line(linetype = 2, colour = "grey", size = 0.5),
plot.title = element_text(size = 12, hjust = 0.5)) -> p2
p2
Anyone? Thank you!