Hello!
I am trying to install dada2 through Bioconductor using:
install.packages("BiocManager")
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install(version = "3.20")
BiocManager::install("dada2")
and I obtain the following error:
ERROR: failed to lock directory ‘/cloud/lib/x86_64-pc-linux-gnu-library/4.4’ for modifying
Try removing ‘/cloud/lib/x86_64-pc-linux-gnu-library/4.4/00LOCK-GenomicAlignments’
ERROR: dependency ‘GenomicAlignments’ is not available for package ‘ShortRead’
- removing ‘/cloud/lib/x86_64-pc-linux-gnu-library/4.4/ShortRead’
ERROR: dependency ‘ShortRead’ is not available for package ‘dada2’ - removing ‘/cloud/lib/x86_64-pc-linux-gnu-library/4.4/dada2’
I understand there are dependencies that need to be updated on the Posit Cloud that I cannot overwrite... am I correct? Is there something I can do to run dada2 on this platform? Please help!!