Hello I'm running a search with PubTator and get - Error in value[[3L]] - What's wrong?

shiny
,
1

Hello, I am not a bioinformatics student but I need to use Rstudio for a PubTator search for chemiclas, genes and species. The session won't stop running, I can't obtain results for species and get - Error in value[[3L]].
Please help!!!

[1] "C:/Users/paulina/Desktop/pubtator.sqlite"
[1] "C:/Users/paulina/Desktop"
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
Error:
Error: database disk image is malformed

Warning: Error in value[[3L]]: Failed in call to DBI::dbGetQuery
152: stop
151: value[[3L]]
150: tryCatchOne
149: tryCatchList
148: tryCatch
147: pt_select
146: identifier_retireval_etc [ShinyFunctions.R#173]
145: eventReactiveValueFunc [C:\Users\paulina\AppData\Local\Temp\Temp7_GAPALLatest_Compressed.zip\GAPALLatest_Compressed\GAPAL_Shiny/server.R#257]
101: gapal_function
100: renderPrint [C:\Users\paulina\AppData\Local\Temp\Temp7_GAPALLatest_Compressed.zip\GAPALLatest_Compressed\GAPAL_Shiny/server.R#328]
99: func
83: renderFunc
82: output$blah
1: shiny::runApp

2

Welcome to the forum

We need a reproducible example (reprex)

3

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