hello. I run the following code and I receive this error (Error in file(file, "r") : cannot open the connection)

[Mohamed15]

for(year in(1990)){
yr=toString (year)

#Load weather data
wdata <- get_weather(directory = "./Weather1/", country = country, station = station, year = substr(yr, 2, 4))

#LINTUL 1: POTENTIAL PRODUCTION
results_pot <- ode(Lintul_1_iniSTATES(crop),
seq(STTIME, FINTIM, by = DELT),
Lintul_1,
crop,
WDATA = wdata,
method = "euler")
results_pot<-as.data.frame(results_pot)

#Write results to file
results_pot[,"year"] = year
write.csv(results_pot,file=paste0("./weather1/Result.GHA1.",yr, ".csv",sep = "", collapse = NULL))

[nirgrahamuk]

@Mohamed15

her(directory = "./Weather1/", c

@Mohamed15

e0("./weather1/Resul

do you have two folders with different spellings of (W/w)eather1, or are one of your two mentions wrong ?

[Mohamed15]

hi sir, actually I start receiving a new error (Error in eval(e, x, parent.frame()) : object 'DOYS' not found)
in the following code.

Lintul_1 <-function(Time, State, Pars, WDATA){
with(as.list(c(State, Pars)), {
#Get the weather data for the day
WDATA <- subset(WDATA, DOYS == floor(Time))
if(nrow(WDATA) != 1){
print(paste0("ERROR in weather data file: no or more than one record for day nr: ",Time))
print(WDATA)
stop()
}
DTEFF <- max(0, WDATA[,"DAVTMP"] - TBASE) # effective daily temperature (for crop development a threshold temperature (TBASE) needs to be exceeded)
RPAR <- FPAR * WDATA[,"DTR"] # PAR MJ m-2 d-1

#determine rates when crop is still growing
if(TSUM < FINTSUM){
  # Once the emergence date is reached and enough water is available the crop emerges (1), 
  # Once the crop is established is does not disappear again (2)
  emerg1 <- ifelse((Time - DOYEM) >= 0, 1, 0)
  emerg2 <- ifelse(LAI > 0, 1, 0)
  # Emergence of the crop is used to calculate the accumulated temperature sum.
  EMERG  <- max(emerg1,emerg2)
  RTSUM  <- DTEFF * EMERG
  
  # Light interception (MJ m-2 d-1) and total crop growth rate (g m-2 d-1)
  PARINT <- RPAR * (1 - exp(-K * LAI))
  GTOTAL <- LUE * PARINT
  
  # Relative death rate (d-1) due to aging
  RDRDV <- ifelse((TSUM-TSUMAN) < 0, 0, approx(RDRT.TEMP,RDRT.RDR,WDATA[,"DAVTMP"])$y)
  
  # Relative death rate (d-1) due to self shading
  RDRSH <- pmax(0, pmin( RDRSHM * (LAI-LAICR) / LAICR, RDRSHM))
  
  # Effective relative death rate (1; d-1) and the resulting decrease in LAI (2; m2 m-2 d-1) and leaf weight (3; g m-2 d-1)
  RDR   <- max(RDRDV, RDRSH) 	# (1)
  DLAI  <- LAI * RDR  			  # (2)
  RWLVD <- WLVG * RDR	        # (3)
  
  # Allocation to roots (2), leaves (4), stems (5) and storage organs (6)
  FRT    <- approx(x = FRTTB.TSUM,y = FRTTB.FRT,xout = TSUM)$y 		# (2)
  FLV    <- approx(x = FLVTB.TSUM,y = FLVTB.FLV,xout = TSUM)$y  	# (4)
  FST    <- approx(x = FSTTB.TSUM,y = FSTTB.FST,xout = TSUM)$y   	# (5)
  FSO    <- approx(x = FSOTB.TSUM,y = FSOTB.FSO,xout = TSUM)$y 		# (6)

  # Change in biomass (g m-2 d-1) for leaves (1), green leaves (2), stems (3), storage organs (4) and roots (5)
  RWLV   <- GTOTAL * FLV 			    # (1)
  RWLVG  <- GTOTAL * FLV - RWLVD 	# (2)
  RWST   <- GTOTAL * FST			    # (3)
  RWSO   <- GTOTAL * FSO			    # (4)
  RWRT   <- GTOTAL * FRT			    # (5)
  
  GLAI <- gla(TIME = Time, DTEFF = DTEFF, TSUM = TSUM, LAI = LAI, RWLV = RWLV, PARS = Pars)
  # Change in LAI (m2 m-2 d-1) due to new growth of leaves
  RLAI <- GLAI - DLAI
  
  RATES <- c(RTSUM = RTSUM, RPAR = RPAR, RLAI = RLAI,
             RWLV = RWLV, RWLVG = RWLVG, RWLVD = RWLVD,
             RWST = RWST, RWSO = RWSO, RWRT = RWRT) 
  AUX <- c(WBIOMTHA = (WSO + WLV + WST + WRT) * 0.01,
             WSOTHA = WSO * 0.01, 
           HI = WSO /(WSO + WLV + WST + WRT))
  
}
else{
  #all plant related rates are set to 0
  RATES <- c(RTSUM = 0, RPAR = 0, RLAI = 0,
             RWLV = 0, RWLVG = 0, RWLVD = 0,
             RWST = 0, RWSO = 0, RWRT = 0) 
  AUX <- c(WBIOMTHA = (WSO + WLV + WST + WRT) * 0.01,
           WSOTHA = WSO * 0.01, 
           HI = ifelse((WSO + WLV + WST + WRT)==0, 0, WSO /(WSO + WLV + WST + WRT)))
}
return(list(RATES,c(AUX, RATES) )) 

})
}

This function reads in CABO format weather files. If end time is >365 or >366 days, two years are combined.

[nirgrahamuk]

Your code assumes the presence of DOYS in WDATA, but there is no DOYS.

[Mohamed15]

the problem is that I run it for an other file and it works, but I change only the data and it does not work.
the two data file are the same just the value.

[nirgrahamuk]

I dont know what 'the same just the value means'.
But all the evidence points to one file having a DOYS column and the other not having a DOYS column.