Hello,
I am using reticulate to run python code. I got /usr/lib/x86_64-linux-gnu/libstdc++.so.6: version `GLIBCXX_3.4.22' not found issue. Would you be able to update libstdc++ anytime soon?
The error happened when I import module (ot) using reticulate.
ot = import("ot")
Error in py_module_import(module, convert = convert) :
ImportError: /usr/lib/x86_64-linux-gnu/libstdc++.so.6: version `GLIBCXX_3.4.22' not found (required by /home/rstudio-user/.local/share/r-miniconda/envs/r-reticulate/lib/python3.6/site-packages/scipy/fft/_pocketfft/pypocketfft.cpython-36m-x86_64-linux-gnu.so)
The py_config() is
python: /home/rstudio-user/.local/share/r-miniconda/envs/r-reticulate/bin/python
libpython: /home/rstudio-user/.local/share/r-miniconda/envs/r-reticulate/lib/libpython3.6m.so
pythonhome: /home/rstudio-user/.local/share/r-miniconda/envs/r-reticulate:/home/rstudio-user/.local/share/r-miniconda/envs/r-reticulate
version: 3.6.12 | packaged by conda-forge | (default, Dec 9 2020, 00:36:02) [GCC 9.3.0]
numpy: /home/rstudio-user/.local/share/r-miniconda/envs/r-reticulate/lib/python3.6/site-packages/numpy
numpy_version: 1.19.4
BUT it works fine in the terminal.
rstudio-user@application-3413777-deployment-8567481-9v9j5:~$ /home/rstudio-user/.local/share/r-miniconda/envs/single_cell/bin/python
Python 3.8.6 | packaged by conda-forge | (default, Nov 27 2020, 19:31:52)
[GCC 9.3.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
import ot
The project link is:
RStudio Cloud
Thanks for your help.