Hi,
I tried checking out the forum before writing but don't seem to be able to find a solution, so here is my question.
I have a package on private repository that imports another package from a private repository in the same organization (myorg/pak1 and myorg/pak2).
I can verify that both packages can be installed from Rstudio, and devtools::check() runs without errors. I have the package correctly put in the DESCRIPTION file in Imports
and Remotes
.
I am now trying to use the r-cmd-check.yaml
, with usethis
:
on:
push:
branches: [main, master]
pull_request:
branches: [main, master]
name: R-CMD-check
jobs:
R-CMD-check:
runs-on: ubuntu-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
R_KEEP_PKG_SOURCE: yes
steps:
- uses: actions/checkout@v2
- uses: r-lib/actions/setup-r@v1
with:
use-public-rspm: true
- uses: r-lib/actions/setup-r-dependencies@v1
with:
extra-packages: rcmdcheck
- uses: r-lib/actions/check-r-package@v1
The workflow fails in setup-r-dependencies
:
Run r-lib/actions/setup-r-dependencies@v1
with:
extra-packages: rcmdcheck
cache-version: 1
pak-version: stable
env:
GITHUB_PAT: ***
R_KEEP_PKG_SOURCE: yes
R_LIBS_USER: /home/runner/work/_temp/Library
TZ: UTC
_R_CHECK_SYSTEM_CLOCK_: FALSE
NOT_CRAN: true
RSPM: https://packagemanager.rstudio.com/all/__linux__/focal/latest
Run cat("::group::Install pak\n")
Install pak
Installing package into ‘/home/runner/work/_temp/Library’
(as ‘lib’ is unspecified)
trying URL 'https://r-lib.github.io/p/pak/stable/src/contrib/../../linux/x86_64/pak_0.3.0_R-4-2_x86_64-linux.tar.gz'
Content type 'application/gzip' length 7623616 bytes (7.3 MB)
==================================================
downloaded 7.3 MB
* installing *binary* package ‘pak’ ...
* DONE (pak)
The downloaded source packages are in
‘/tmp/RtmpW9II9G/downloaded_packages’
✔ Updated metadata database: 3.28 MB in 7 files.
ℹ Updating metadata database
✔ Updating metadata database ... done
Error: Error: <callr_remote_error: Cannot install packages:
* local::.: Can't install dependency myorg/pak2
* myorg/pak2: Can't find GitHub repo myorg/pak2.>
in process 8643
-->
<simpleError: Cannot install packages:
* local::.: Can't install dependency myorg/pak2
* myorg/pak2: Can't find GitHub repo myorg/pak2.>
Stack trace:
12. (function (...) ...
13. base:::withCallingHandlers(cli_message = function(msg) { ...
14. get("pkg_deps_internal", asNamespace("pak"))(...)
15. pak:::pkg_deps_internal2(pkg, upgrade, dependencies)
16. deps$stop_for_solution_error()
17. private$plan$stop_for_solve_error()
18. pkgdepends:::pkgplan_stop_for_solve_error(self, private)
19. base:::stop("Cannot install packages:\n", msg, call. = FALSE)
20. base:::.handleSimpleError(function (e) ...
21. h(simpleError(msg, call))
22. base:::stop(e)
23. (function (e) ...
x Cannot install packages:
* local::.: Can't install dependency myorg/pak2
* myorg/pak2: Can't find GitHub repo myorg/pak2.
Execution halted
Error: Process completed with exit code 1.
I am not sure what I am missing or doing wrong. I have a github token which I presume is being loaded correctly in env:
. I tried some things like installing the package explicitly with remotes
but regardless I keep getting the same error.
Thanks for any hints.