Dear RStudio Community,
I just tried create a shinyapp using a package of my own, on github, which includes Fortran code. The Fortran code has modules. It seems that it cannot compile properly because of the module. A tricky thing is that the order in which the compilation goes matters as the module must be compiled before further source files dependent on the modules are compiled. I got around this by making the name of the module alphabetically the first one.
Is it the case that the compilation is not happening sequentially when installing through shinyapp? And is there any way around this?
I'm using the latest Shiny package and have a Windows 10 set. Further details including error messages below.
Many thanks,
Mike
Be sure to include:
- Cite any error or warning messages, and where you receive them.
Here are the warnings and errors
> rsconnect::deployApp('scripts')
[2020-05-03T08:20:10.272676944+0000] Building R package: NicheMapR (2.0.0)
/mnt/packages/build /mnt
Warning in untar2(tarfile, files, list, exdir, restore_times) :
skipping pax global extended headers
* installing to library ‘/opt/R/3.6.1/lib/R/library’
* installing *source* package ‘NicheMapR’ ...
** using staged installation
** libs
make: Entering directory '/tmp/Rtmp4xhidC/R.INSTALLfe2168e013/mrke-NicheMapR-037efa2/src'
gfortran -fpic -g -O2 -c AACOMMONDAT.f -o AACOMMONDAT.o
gfortran -fpic -g -O2 -c ABOVEGROUND.f -o ABOVEGROUND.o
gfortran -fpic -g -O2 -c ADJREC.f -o ADJREC.o
gfortran -fpic -g -O2 -c BELOWGROUND.f -o BELOWGROUND.o
BELOWGROUND.f:22:9:
USE AACOMMONDAT
1
Fatal Error: Can't open module file ‘aacommondat.mod’ for reading at (1): No such file or directory
ABOVEGROUND.f:22:9:
USE AACOMMONDAT
1
Fatal Error: Can't open module file ‘aacommondat.mod’ for reading at (1): No such file or directory
compilation terminated.
compilation terminated.
/opt/R/3.6.1/lib/R/etc/Makeconf:190: recipe for target 'ABOVEGROUND.o' failed
make: *** [ABOVEGROUND.o] Error 1
make: *** Waiting for unfinished jobs....
/opt/R/3.6.1/lib/R/etc/Makeconf:190: recipe for target 'BELOWGROUND.o' failed
make: *** [BELOWGROUND.o] Error 1
make: Leaving directory '/tmp/Rtmp4xhidC/R.INSTALLfe2168e013/mrke-NicheMapR-037efa2/src'
make: Entering directory '/tmp/Rtmp4xhidC/R.INSTALLfe2168e013/mrke-NicheMapR-037efa2/src'
make: Leaving directory '/tmp/Rtmp4xhidC/R.INSTALLfe2168e013/mrke-NicheMapR-037efa2/src'
ERROR: compilation failed for package ‘NicheMapR’
* removing ‘/opt/R/3.6.1/lib/R/library/NicheMapR’
################################# End Task Log #################################
Error: Unhandled Exception: Child Task 725241837 failed: Error building image: Error building NicheMapR (2.0.0). Build exited with non-zero status: 1
- Cite output of "rsconnect::appDependencies()"
package version source
1 BH 1.69.0-1 CRAN
2 NicheMapR 2.0.0 github
3 R6 2.4.0 CRAN
4 RNetCDF 2.1-1 CRAN
5 Rcpp 1.0.4.6 CRAN
6 crayon 1.3.4 CRAN
7 deSolve 1.28 CRAN
8 digest 0.6.22 CRAN
9 fastmap 1.0.1 CRAN
10 geonames 0.999 CRAN
11 htmltools 0.4.0 CRAN
12 httpuv 1.5.2 CRAN
13 jsonlite 1.6 CRAN
14 later 1.0.0 CRAN
15 lattice 0.20-38 CRAN
16 magrittr 1.5 CRAN
17 mime 0.7 CRAN
18 ncdf4 1.17 CRAN
19 promises 1.1.0 CRAN
20 raster 3.1-5 CRAN
21 rjson 0.2.20 CRAN
22 rlang 0.4.1 CRAN
23 shiny 1.4.0.2 CRAN
24 sourcetools 0.1.7 CRAN
25 sp 1.4-1 CRAN
26 xtable 1.8-4 CRAN
- Provide your shiny app's application URL/id.
https://nichemapr.shinyapps.io/scripts/