feature lost: cross-references do not pass to pdf

I'm writing a book in Rstudio using Bookdown. I had to take a break and suddenly none of my cross-references work in the pdf version of the document although they still work in HTML. Before, everything was okay, but now no bib or equation or figure references work. I looked for an explanation and it may be due to pandoc version. I don't know what to do :frowning: Can anyone help me?

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