I have shiny server open and Rstudio server open running on a CentOS machine. Everything was working fine yesterday and I clicked on "Check for package updates" in Rstudio server and did select all and now my shiny apps are not displaying properly and they do not work. I don't know if those two are related, but that is the only thing I can think of that changed. Chrome inspector shows that all the resources are not being loaded. Might be a simple fix, but I can't figure it out. Please see full list below. These are not resources I am calling myself. Please give me any hints on how to debug this. Thanks in advance.
Failed to load resource: the server responded with a status of 404 (Not Found)
shiny.css:1 Failed to load resource: the server responded with a status of 404 (Not Found)
all.min.css:1 Failed to load resource: the server responded with a status of 404 (Not Found)
v4-shims.min.css:1 Failed to load resource: the server responded with a status of 404 (Not Found)
bootstrap-datepicker3.min.css:1 Failed to load resource: the server responded with a status of 404 (Not Found)
bootstrap.min.css:1 Failed to load resource: the server responded with a status of 404 (Not Found)
AdminLTE.min.css:1 Failed to load resource: the server responded with a status of 404 (Not Found)
_all-skins.min.css:1 Failed to load resource: the server responded with a status of 404 (Not Found)
shinydashboard.css:1 Failed to load resource: the server responded with a status of 404 (Not Found)
jquery.min.js:1 Failed to load resource: the server responded with a status of 404 (Not Found)
shiny.min.js:1 Failed to load resource: the server responded with a status of 404 (Not Found)
bootstrap-datepicker.min.js:1 Failed to load resource: the server responded with a status of 404 (Not Found)
bootstrap.min.js:1 Failed to load resource: the server responded with a status of 404 (Not Found)
html5shiv.min.js:1 Failed to load resource: the server responded with a status of 404 (Not Found)
respond.min.js:1 Failed to load resource: the server responded with a status of 404 (Not Found)
shiny.css:1 Failed to load resource: the server responded with a status of 404 (Not Found)
app.min.js:1 Failed to load resource: the server responded with a status of 404 (Not Found)
shinydashboard.min.js:1 Failed to load resource: the server responded with a status of 404 (Not Found)
all.min.css:1 Failed to load resource: the server responded with a status of 404 (Not Found)
v4-shims.min.css:1 Failed to load resource: the server responded with a status of 404 (Not Found)
bootstrap-datepicker3.min.css:1 Failed to load resource: the server responded with a status of 404 (Not Found)
bootstrap-datepicker.min.js:1 Failed to load resource: the server responded with a status of 404 (Not Found)
(index):18 Uncaught ReferenceError: $ is not defined
at (index):18
at (index):20
bootstrap.min.css:1 Failed to load resource: the server responded with a status of 404 (Not Found)
bootstrap.min.js:1 Failed to load resource: the server responded with a status of 404 (Not Found)
html5shiv.min.js:1 Failed to load resource: the server responded with a status of 404 (Not Found)
respond.min.js:1 Failed to load resource: the server responded with a status of 404 (Not Found)
AdminLTE.min.css:1 Failed to load resource: the server responded with a status of 404 (Not Found)
_all-skins.min.css:1 Failed to load resource: the server responded with a status of 404 (Not Found)
app.min.js:1 Failed to load resource: the server responded with a status of 404 (Not Found)
shinydashboard.css:1 Failed to load resource: the server responded with a status of 404 (Not Found)
shinydashboard.min.js:1 Failed to load resource: the server responded with a status of 404 (Not Found)
shiny-server-client.min.js:2 Uncaught TypeError: $ is not a function
at new ReconnectUI (shiny-server-client.min.js:2)
at Object.<anonymous> (shiny-server-client.min.js:1)
at Object.16../decorators/connection-context (shiny-server-client.min.js:1)
at s (shiny-server-client.min.js:1)
at e (shiny-server-client.min.js:1)
at shiny-server-client.min.js:1
(index):35 Uncaught ReferenceError: preShinyInit is not defined
at (index):35
shiny.css:1 Failed to load resource: the server responded with a status of 404 (Not Found)
all.min.css:1 Failed to load resource: the server responded with a status of 404 (Not Found)
v4-shims.min.css:1 Failed to load resource: the server responded with a status of 404 (Not Found)
bootstrap-datepicker3.min.css:1 Failed to load resource: the server responded with a status of 404 (Not Found)
bootstrap.min.css:1 Failed to load resource: the server responded with a status of 404 (Not Found)
AdminLTE.min.css:1 Failed to load resource: the server responded with a status of 404 (Not Found)
_all-skins.min.css:1 Failed to load resource: the server responded with a status of 404 (Not Found)
shinydashboard.css:1 Failed to load resource: the server responded with a status of 404 (Not Found)