I am having package installation issues lately. Following installation command, I get ;
Error in eval(quote({ :
With R version 3.6 or greater, install Bioconductor packages using BiocManager; see https://bioconductor.org/install
Calls: source ... local -> eval.parent -> eval -> eval -> eval -> eval
Execution halted
Installation through R --vanilla works just fine. Since this has started happening lately, I don't think there is an inherent bug issue with Rstudio but I am sure what is going on. Any help will be appreciated.
> session_info()
─ Session info
setting value
version R version 3.6.0 (2019-04-26)
os macOS Mojave 10.14.5
system x86_64, darwin18.5.0
ui RStudio
language (EN)
collate en_US.UTF-8
ctype en_US.UTF-8
tz America/Indiana/Indianapolis
date 2019-05-29
─ Packages
! package * version date lib source
assertthat 0.2.1 2019-03-21 [1] CRAN (R 3.6.0)
backports 1.1.4 2019-04-10 [1] CRAN (R 3.6.0)
BiocManager * 1.30.4 2018-11-13 [1] CRAN (R 3.6.0)
BiocParallel * 1.18.0 2019-05-03 [1] Bioconductor
callr 3.2.0 2019-03-15 [1] CRAN (R 3.6.0)
cli 1.1.0 2019-03-19 [1] CRAN (R 3.6.0)
colorspace 1.4-1 2019-03-18 [1] CRAN (R 3.6.0)
crayon 1.3.4 2017-09-16 [1] CRAN (R 3.6.0)
curl 3.3 2019-01-10 [1] CRAN (R 3.6.0)
data.table * 1.12.2 2019-04-07 [1] CRAN (R 3.6.0)
desc 1.2.0 2018-05-01 [1] CRAN (R 3.6.0)
devtools * 2.0.2 2019-04-08 [1] CRAN (R 3.6.0)
digest 0.6.19 2019-05-20 [1] CRAN (R 3.6.0)
dplyr 0.8.1 2019-05-14 [1] CRAN (R 3.6.0)
V edgeR * 3.26.3 2019-05-27 [1] Bioconductor
fastcluster * 1.1.25 2018-06-07 [1] CRAN (R 3.6.0)
fs 1.3.1 2019-05-06 [1] CRAN (R 3.6.0)
ggplot2 * 3.1.1 2019-04-07 [1] CRAN (R 3.6.0)
ggpubr * 0.2.999 2019-05-14 [1] Github (kassambara/ggpubr@8236f56)
ggsignif 0.5.0 2019-02-20 [1] CRAN (R 3.6.0)
glue 1.3.1 2019-03-12 [1] CRAN (R 3.6.0)
gtable 0.3.0 2019-03-25 [1] CRAN (R 3.6.0)
lattice 0.20-38 2018-11-04 [2] CRAN (R 3.6.0)
lazyeval 0.2.2 2019-03-15 [1] CRAN (R 3.6.0)
limma * 3.40.2 2019-05-17 [1] Bioconductor
locfit 1.5-9.1 2013-04-20 [1] CRAN (R 3.6.0)
magrittr * 1.5 2014-11-22 [1] CRAN (R 3.6.0)
memoise 1.1.0 2017-04-21 [1] CRAN (R 3.6.0)
munsell 0.5.0 2018-06-12 [1] CRAN (R 3.6.0)
V pillar 1.4.0 2019-05-28 [1] CRAN (R 3.6.0)
pkgbuild 1.0.3 2019-03-20 [1] CRAN (R 3.6.0)
pkgconfig 2.0.2 2018-08-16 [1] CRAN (R 3.6.0)
pkgload 1.0.2 2018-10-29 [1] CRAN (R 3.6.0)
plyr 1.8.4 2016-06-08 [1] CRAN (R 3.6.0)
prettyunits 1.0.2 2015-07-13 [1] CRAN (R 3.6.0)
processx 3.3.1 2019-05-08 [1] CRAN (R 3.6.0)
ps 1.3.0 2018-12-21 [1] CRAN (R 3.6.0)
purrr 0.3.2 2019-03-15 [1] CRAN (R 3.6.0)
R6 2.4.0 2019-02-14 [1] CRAN (R 3.6.0)
Rcpp 1.0.1 2019-03-17 [1] CRAN (R 3.6.0)
remotes 2.0.4 2019-04-10 [1] CRAN (R 3.6.0)
rlang 0.3.4 2019-04-07 [1] CRAN (R 3.6.0)
rprojroot 1.3-2 2018-01-03 [1] CRAN (R 3.6.0)
rstudioapi 0.10 2019-03-19 [1] CRAN (R 3.6.0)
scales 1.0.0 2018-08-09 [1] CRAN (R 3.6.0)
sessioninfo 1.1.1 2018-11-05 [1] CRAN (R 3.6.0)
stringi 1.4.3 2019-03-12 [1] CRAN (R 3.6.0)
stringr * 1.4.0 2019-02-10 [1] CRAN (R 3.6.0)
TeachingDemos * 2.10 2016-02-12 [1] CRAN (R 3.6.0)
tibble 2.1.1 2019-03-16 [1] CRAN (R 3.6.0)
tidyselect 0.2.5 2018-10-11 [1] CRAN (R 3.6.0)
usethis * 1.5.0 2019-04-07 [1] CRAN (R 3.6.0)
withr 2.1.2 2018-03-15 [1] CRAN (R 3.6.0)
[1] /Users/ahoji/Documents/R_lib
[2] /usr/local/Cellar/r/3.6.0_2/lib/R/library
V ── Loaded and on-disk version mismatch.