I'm encountering the same error deploying R apps. The end error is different, but the deployment seems to be failing due to a problem during the installation of libc-bin as in agdamsbo's logs.
── Preparing for deployment ────────────────────────────────────────────────────
✔ Re-deploying "shinyscholar" using "server: shinyapps.io / username: simonsmart"
ℹ Looking up application with id "10549829"...
✔ Found application <https://simonsmart.shinyapps.io/shinyscholar/>
ℹ Bundling 58 files: 'common.R', 'global.R', 'helpers.R', 'server.R', 'ui.R', 'www/css/styles.css', 'www/favicon.ico', 'www/js/shinyjs-funcs.js', 'www/logo.png', 'modules/core_code.R', 'modules/core_intro.R', 'modules/core_load.R', 'modules/core_mapping.R', 'modules/core_save.R', 'modules/plot_hist.md', 'modules/plot_hist.R', 'modules/plot_hist.Rmd', 'modules/plot_hist.yml', …, 'Rmd/userReport_intro.Rmd', and 'Rmd/userReport_module.Rmd'
ℹ Capturing R dependencies with renv
✔ Found 157 dependencies
✔ Created 176,443b bundle
ℹ Uploading bundle...
✔ Uploaded bundle with id 9402811
── Deploying to server ─────────────────────────────────────────────────────────
Waiting for task: 1481434667
building: Parsing manifest
building: Building image: 11544262
building: Installing system dependencies
building: Fetching packages
error: Building package: shinyscholar
## Begin Task Log ##############################################################
Quarto not found.
[2024-11-22T13:58:24.428267641+0000] Execute script: packages/build/units.sh
+ set -e
+ apt-get update -qq
W: http://cran.rstudio.com/bin/linux/ubuntu/jammy-cran40/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+ apt-get install -y libudunits2-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
libudunits2-0 libudunits2-data
The following NEW packages will be installed:
libudunits2-0 libudunits2-data libudunits2-dev
0 upgraded, 3 newly installed, 0 to remove and 144 not upgraded.
Need to get 433 kB of archives.
After this operation, 1064 kB of additional disk space will be used.
Get:1 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/universe amd64 libudunits2-data all 2.2.28-3 [19.0 kB]
Get:2 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/universe amd64 libudunits2-0 amd64 2.2.28-3 [50.3 kB]
Get:3 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/universe amd64 libudunits2-dev amd64 2.2.28-3 [364 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 433 kB in 0s (15.2 MB/s)
Selecting previously unselected package libudunits2-data.
(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 293173 files and directories currently installed.)
Preparing to unpack .../libudunits2-data_2.2.28-3_all.deb ...
Unpacking libudunits2-data (2.2.28-3) ...
Selecting previously unselected package libudunits2-0.
Preparing to unpack .../libudunits2-0_2.2.28-3_amd64.deb ...
Unpacking libudunits2-0 (2.2.28-3) ...
Selecting previously unselected package libudunits2-dev.
Preparing to unpack .../libudunits2-dev_2.2.28-3_amd64.deb ...
Unpacking libudunits2-dev (2.2.28-3) ...
Setting up libudunits2-data (2.2.28-3) ...
Setting up libudunits2-0 (2.2.28-3) ...
Setting up libudunits2-dev (2.2.28-3) ...
Processing triggers for install-info (6.8-4build1) ...
Processing triggers for libc-bin (2.35-0ubuntu3.7) ...
[2024-11-22T13:58:28.879255703+0000] Execute script: packages/build/textshaping.sh
+ set -e
+ apt-get update -qq
W: http://cran.rstudio.com/bin/linux/ubuntu/jammy-cran40/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+ apt-get install -y libharfbuzz-dev libfribidi-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
gir1.2-harfbuzz-0.0 libgraphite2-dev libharfbuzz-gobject0 libharfbuzz-icu0
Suggested packages:
libgraphite2-utils
The following NEW packages will be installed:
gir1.2-harfbuzz-0.0 libfribidi-dev libgraphite2-dev libharfbuzz-dev
libharfbuzz-gobject0 libharfbuzz-icu0
0 upgraded, 6 newly installed, 0 to remove and 144 not upgraded.
Need to get 696 kB of archives.
After this operation, 3821 kB of additional disk space will be used.
Get:1 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy-updates/main amd64 gir1.2-harfbuzz-0.0 amd64 2.7.4-1ubuntu3.1 [31.6 kB]
Get:2 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy-updates/main amd64 libfribidi-dev amd64 1.0.8-2ubuntu3.1 [64.8 kB]
Get:3 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/main amd64 libgraphite2-dev amd64 1.3.14-1build2 [14.7 kB]
Get:4 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy-updates/main amd64 libharfbuzz-icu0 amd64 2.7.4-1ubuntu3.1 [5886 B]
Get:5 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy-updates/main amd64 libharfbuzz-gobject0 amd64 2.7.4-1ubuntu3.1 [26.0 kB]
Get:6 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy-updates/main amd64 libharfbuzz-dev amd64 2.7.4-1ubuntu3.1 [553 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 696 kB in 0s (15.5 MB/s)
Selecting previously unselected package gir1.2-harfbuzz-0.0:amd64.
(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 293213 files and directories currently installed.)
Preparing to unpack .../0-gir1.2-harfbuzz-0.0_2.7.4-1ubuntu3.1_amd64.deb ...
Unpacking gir1.2-harfbuzz-0.0:amd64 (2.7.4-1ubuntu3.1) ...
Selecting previously unselected package libfribidi-dev:amd64.
Preparing to unpack .../1-libfribidi-dev_1.0.8-2ubuntu3.1_amd64.deb ...
Unpacking libfribidi-dev:amd64 (1.0.8-2ubuntu3.1) ...
Selecting previously unselected package libgraphite2-dev:amd64.
Preparing to unpack .../2-libgraphite2-dev_1.3.14-1build2_amd64.deb ...
Unpacking libgraphite2-dev:amd64 (1.3.14-1build2) ...
Selecting previously unselected package libharfbuzz-icu0:amd64.
Preparing to unpack .../3-libharfbuzz-icu0_2.7.4-1ubuntu3.1_amd64.deb ...
Unpacking libharfbuzz-icu0:amd64 (2.7.4-1ubuntu3.1) ...
Selecting previously unselected package libharfbuzz-gobject0:amd64.
Preparing to unpack .../4-libharfbuzz-gobject0_2.7.4-1ubuntu3.1_amd64.deb ...
Unpacking libharfbuzz-gobject0:amd64 (2.7.4-1ubuntu3.1) ...
Selecting previously unselected package libharfbuzz-dev:amd64.
Preparing to unpack .../5-libharfbuzz-dev_2.7.4-1ubuntu3.1_amd64.deb ...
Unpacking libharfbuzz-dev:amd64 (2.7.4-1ubuntu3.1) ...
Setting up libharfbuzz-icu0:amd64 (2.7.4-1ubuntu3.1) ...
Setting up libfribidi-dev:amd64 (1.0.8-2ubuntu3.1) ...
Setting up libharfbuzz-gobject0:amd64 (2.7.4-1ubuntu3.1) ...
Setting up gir1.2-harfbuzz-0.0:amd64 (2.7.4-1ubuntu3.1) ...
Setting up libgraphite2-dev:amd64 (1.3.14-1build2) ...
Setting up libharfbuzz-dev:amd64 (2.7.4-1ubuntu3.1) ...
Processing triggers for libc-bin (2.35-0ubuntu3.7) ...
[2024-11-22T13:58:32.381142842+0000] Execute script: packages/build/sf.sh
+ set -e
++ lsb_release -cs
+ OS_CODENAME=jammy
+ '[' jammy == xenial ']'
+ apt-get update -qq
W: http://cran.rstudio.com/bin/linux/ubuntu/jammy-cran40/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+ apt-get install -y libudunits2-dev libgdal-dev libgeos-dev libproj-dev
Reading package lists...
Building dependency tree...
Reading state information...
libgdal-dev is already the newest version (3.4.1+dfsg-1build4).
libgeos-dev is already the newest version (3.10.2-1).
libgeos-dev set to manually installed.
libproj-dev is already the newest version (8.2.1-1).
libudunits2-dev is already the newest version (2.2.28-3).
0 upgraded, 0 newly installed, 0 to remove and 144 not upgraded.
[2024-11-22T13:58:34.833433972+0000] Execute script: packages/build/ragg.sh
+ set -e
+ apt-get update -qq
W: http://cran.rstudio.com/bin/linux/ubuntu/jammy-cran40/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+ apt-get install -y fonts-noto-color-emoji libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev libharfbuzz-dev libfribidi-dev
Reading package lists...
Building dependency tree...
Reading state information...
libjpeg-dev is already the newest version (8c-2ubuntu10).
libjpeg-dev set to manually installed.
libpng-dev is already the newest version (1.6.37-3build5).
libpng-dev set to manually installed.
fonts-noto-color-emoji is already the newest version (2.042-0ubuntu0.22.04.1).
fonts-noto-color-emoji set to manually installed.
libfreetype6-dev is already the newest version (2.11.1+dfsg-1ubuntu0.2).
libfreetype6-dev set to manually installed.
libfribidi-dev is already the newest version (1.0.8-2ubuntu3.1).
libharfbuzz-dev is already the newest version (2.7.4-1ubuntu3.1).
The following NEW packages will be installed:
libtiff5-dev
0 upgraded, 1 newly installed, 0 to remove and 144 not upgraded.
Need to get 2096 B of archives.
After this operation, 26.6 kB of additional disk space will be used.
Get:1 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy-updates/main amd64 libtiff5-dev amd64 4.3.0-6ubuntu0.10 [2096 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 2096 B in 0s (125 kB/s)
Selecting previously unselected package libtiff5-dev:amd64.
(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 293348 files and directories currently installed.)
Preparing to unpack .../libtiff5-dev_4.3.0-6ubuntu0.10_amd64.deb ...
Unpacking libtiff5-dev:amd64 (4.3.0-6ubuntu0.10) ...
Setting up libtiff5-dev:amd64 (4.3.0-6ubuntu0.10) ...
[2024-11-22T13:58:37.753332960+0000] Execute script: packages/build/gert.sh
+ set -e
++ lsb_release -cs
+ OS_CODENAME=jammy
+ '[' jammy == xenial ']'
+ apt-get update -qq
W: http://cran.rstudio.com/bin/linux/ubuntu/jammy-cran40/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+ apt-get install -y libgit2-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
libgit2-1.1 libhttp-parser-dev libhttp-parser2.9 libmbedcrypto7
libmbedtls-dev libmbedtls14 libmbedx509-1 libssh2-1-dev
Suggested packages:
libmbedtls-doc
The following NEW packages will be installed:
libgit2-1.1 libgit2-dev libhttp-parser-dev libhttp-parser2.9 libmbedcrypto7
libmbedtls-dev libmbedtls14 libmbedx509-1 libssh2-1-dev
0 upgraded, 9 newly installed, 0 to remove and 144 not upgraded.
Need to get 2468 kB of archives.
After this operation, 10.1 MB of additional disk space will be used.
Get:1 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/universe amd64 libhttp-parser2.9 amd64 2.9.4-4 [21.5 kB]
Get:2 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/universe amd64 libmbedcrypto7 amd64 2.28.0-1build1 [204 kB]
Get:3 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/universe amd64 libmbedx509-1 amd64 2.28.0-1build1 [47.2 kB]
Get:4 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/universe amd64 libmbedtls14 amd64 2.28.0-1build1 [82.7 kB]
Get:5 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy-updates/universe amd64 libgit2-1.1 amd64 1.1.0+dfsg.1-4.1ubuntu0.1 [457 kB]
Get:6 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/universe amd64 libmbedtls-dev amd64 2.28.0-1build1 [629 kB]
Get:7 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/universe amd64 libssh2-1-dev amd64 1.10.0-3 [243 kB]
Get:8 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/universe amd64 libhttp-parser-dev amd64 2.9.4-4 [20.4 kB]
Get:9 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy-updates/universe amd64 libgit2-dev amd64 1.1.0+dfsg.1-4.1ubuntu0.1 [764 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 2468 kB in 0s (41.8 MB/s)
Selecting previously unselected package libhttp-parser2.9:amd64.
(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 293351 files and directories currently installed.)
Preparing to unpack .../0-libhttp-parser2.9_2.9.4-4_amd64.deb ...
Unpacking libhttp-parser2.9:amd64 (2.9.4-4) ...
Selecting previously unselected package libmbedcrypto7:amd64.
Preparing to unpack .../1-libmbedcrypto7_2.28.0-1build1_amd64.deb ...
Unpacking libmbedcrypto7:amd64 (2.28.0-1build1) ...
Selecting previously unselected package libmbedx509-1:amd64.
Preparing to unpack .../2-libmbedx509-1_2.28.0-1build1_amd64.deb ...
Unpacking libmbedx509-1:amd64 (2.28.0-1build1) ...
Selecting previously unselected package libmbedtls14:amd64.
Preparing to unpack .../3-libmbedtls14_2.28.0-1build1_amd64.deb ...
Unpacking libmbedtls14:amd64 (2.28.0-1build1) ...
Selecting previously unselected package libgit2-1.1:amd64.
Preparing to unpack .../4-libgit2-1.1_1.1.0+dfsg.1-4.1ubuntu0.1_amd64.deb ...
Unpacking libgit2-1.1:amd64 (1.1.0+dfsg.1-4.1ubuntu0.1) ...
Selecting previously unselected package libmbedtls-dev:amd64.
Preparing to unpack .../5-libmbedtls-dev_2.28.0-1build1_amd64.deb ...
Unpacking libmbedtls-dev:amd64 (2.28.0-1build1) ...
Selecting previously unselected package libssh2-1-dev:amd64.
Preparing to unpack .../6-libssh2-1-dev_1.10.0-3_amd64.deb ...
Unpacking libssh2-1-dev:amd64 (1.10.0-3) ...
Selecting previously unselected package libhttp-parser-dev.
Preparing to unpack .../7-libhttp-parser-dev_2.9.4-4_amd64.deb ...
Unpacking libhttp-parser-dev (2.9.4-4) ...
Selecting previously unselected package libgit2-dev:amd64.
Preparing to unpack .../8-libgit2-dev_1.1.0+dfsg.1-4.1ubuntu0.1_amd64.deb ...
Unpacking libgit2-dev:amd64 (1.1.0+dfsg.1-4.1ubuntu0.1) ...
Setting up libmbedcrypto7:amd64 (2.28.0-1build1) ...
Setting up libssh2-1-dev:amd64 (1.10.0-3) ...
Setting up libhttp-parser2.9:amd64 (2.9.4-4) ...
Setting up libhttp-parser-dev (2.9.4-4) ...
Setting up libmbedx509-1:amd64 (2.28.0-1build1) ...
Setting up libmbedtls14:amd64 (2.28.0-1build1) ...
Setting up libgit2-1.1:amd64 (1.1.0+dfsg.1-4.1ubuntu0.1) ...
Setting up libmbedtls-dev:amd64 (2.28.0-1build1) ...
Setting up libgit2-dev:amd64 (1.1.0+dfsg.1-4.1ubuntu0.1) ...
Processing triggers for libc-bin (2.35-0ubuntu3.7) ... ## End Task Log ################################################################
Error: Unhandled Exception: child_task=1481434669 child_task_status=failed: Error building image: Error fetching shinyscholar (0.2.1) source. <GitHubPackage user='simon-smart88' repo='shinyscholar' private=False> unable to satisfy package: shinyscholar (0.2.1)
Execution halted