Hello,
I deployed my shiny app successfully from RStudio (using R version 3.5) to shinyapps.io:
rsconnect::deployApp()
Preparing to deploy application...DONE
Uploading bundle for application: 381498...DONE
Deploying bundle: 1481380 for application: 381498 ...
Waiting for task: 537322325
building: Parsing manifest
building: Building image: 1495751
building: Installing system dependencies
building: Fetching packages
building: Installing packages
building: Installing files
building: Pushing image: 1495751
deploying: Starting instances
unstaging: Stopping old instances
Application successfully deployed to https://....shinyapps.io/appname
However, when trying to start the application, I receive the following error message:
Error in value[[3L]](cond) :
package or namespace load failed for ‘clusterProfiler’ in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/opt/R/3.5.0/lib/R/library/units/libs/units.so':
libudunits2.so.0: cannot open shared object file: No such file or directory
Calls: local ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
It seems like a problem with the Bioconductor package "clusterProfiler". I tried removing the package and re-installing from the Bioconductor website Link, however, that did not resolve the issue.
Here is my session information:
sessionInfo()
R version 3.5.0 (2018-04-23)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: OS X El Capitan 10.11.6
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] parallel stats4 stats graphics grDevices utils datasets methods
[9] base
other attached packages:
[1] htmlwidgets_1.2 rintrojs_0.2.0 shinythemes_1.1.1
[4] shinyjs_1.0 DT_0.4 plotly_4.7.1
[7] ggplot2_3.0.0 preprocessCore_1.42.0 scran_1.8.2
[10] edgeR_3.22.3 limma_3.36.2 DOSE_3.6.1
[13] clusterProfiler_3.8.1 org.Rn.eg.db_3.6.0 org.Mm.eg.db_3.6.0
[16] org.Hs.eg.db_3.6.0 AnnotationDbi_1.42.1 corrplot_0.84
[19] pheatmap_1.0.10 RColorBrewer_1.1-2 Rtsne_0.13
[22] irlba_2.3.2 Matrix_1.2-14 SingleCellExperiment_1.2.0
[25] SummarizedExperiment_1.10.1 DelayedArray_0.6.1 BiocParallel_1.14.2
[28] matrixStats_0.53.1 Biobase_2.40.0 GenomicRanges_1.32.4
[31] GenomeInfoDb_1.16.0 IRanges_2.14.10 S4Vectors_0.18.3
[34] BiocGenerics_0.26.0 iasva_0.99.3 rsconnect_0.8.8
[37] shiny_1.1.0
loaded via a namespace (and not attached):
[1] fgsea_1.6.0 ggbeeswarm_0.6.0 colorspace_1.3-2
[4] rjson_0.2.20 ggridges_0.5.0 dynamicTreeCut_1.63-1
[7] qvalue_2.12.0 XVector_0.20.0 ggrepel_0.8.0
[10] bit64_0.9-7 splines_3.5.0 tximport_1.8.0
[13] GOSemSim_2.6.0 scater_1.8.0 jsonlite_1.5
[16] packrat_0.4.9-3 cluster_2.0.7-1 GO.db_3.6.0
[19] shinydashboard_0.7.0 ggforce_0.1.3 httr_1.3.1
[22] compiler_3.5.0 rvcheck_0.1.0 assertthat_0.2.0
[25] lazyeval_0.2.1 later_0.7.3 tweenr_0.1.5
[28] htmltools_0.3.6 tools_3.5.0 bindrcpp_0.2.2
[31] igraph_1.2.1 gtable_0.2.0 glue_1.2.0
[34] GenomeInfoDbData_1.1.0 reshape2_1.4.3 DO.db_2.9
[37] dplyr_0.7.6 fastmatch_1.1-0 Rcpp_0.12.17
[40] enrichplot_1.0.2 RJSONIO_1.3-0 DelayedMatrixStats_1.2.0
[43] ggraph_1.0.2 stringr_1.3.1 mime_0.5
[46] statmod_1.4.30 zlibbioc_1.26.0 MASS_7.3-49
[49] scales_0.5.0 BiocInstaller_1.30.0 promises_1.0.1
[52] rhdf5_2.24.0 yaml_2.1.19 memoise_1.1.0
[55] gridExtra_2.3 UpSetR_1.3.3 stringi_1.2.3
[58] RSQLite_2.1.1 rlang_0.2.1 pkgconfig_2.0.1
[61] bitops_1.0-6 lattice_0.20-35 Rhdf5lib_1.2.1
[64] purrr_0.2.5 bindr_0.1.1 cowplot_0.9.2
[67] bit_1.1-14 tidyselect_0.2.4 plyr_1.8.4
[70] magrittr_1.5 R6_2.2.2 DBI_1.0.0
[73] withr_2.1.2 pillar_1.2.3 units_0.6-0
[76] RCurl_1.95-4.10 tibble_1.4.2 viridis_0.5.1
[79] locfit_1.5-9.1 grid_3.5.0 data.table_1.11.4
[82] blob_1.1.1 FNN_1.1 digest_0.6.15
[85] xtable_1.8-2 tidyr_0.8.1 httpuv_1.4.4.2
[88] munsell_0.5.0 beeswarm_0.2.3 viridisLite_0.3.0
[91] vipor_0.4.5
I would appreciate any help on this issue and please let me know if I can provide further information.
Thank you,
Nathan