Hello, very strange behaviour when deploying to shinyapps.io :
I get this log when deploying
── Preparing for deployment ────────────────────────────────────────────────────
✔ Re-deploying "app_test_suivi_eolien" using "server: shinyapps.io / username: ssm-ecologie"
ℹ Looking up application with id "15058661"...
✔ Found application <https://ssm-ecologie.shinyapps.io/app_test_suivi_eolien/>
ℹ Bundling 14 files: 'App_data.RData', 'explications_hist_1.Rmd', 'explications_hist_2.Rmd', 'explications_hist_3.Rmd', 'global.R', 'intro_avertissements.Rmd', 'intro_contexte.Rmd', 'intro_objectifs.Rmd', 'mentionlegale.Rmd', 'Rdata old/App_data.RData', 'server.R', 'ui.R', 'www/logo_dreal.jpg', and 'www/Thumbs.db'
ℹ Capturing R dependencies
✔ Found 158 dependencies
✔ Created 646,338b bundle
ℹ Uploading bundle...
✔ Uploaded bundle with id 10600241
── Deploying to server ─────────────────────────────────────────────────────────
Waiting for task: 1567116907
building: Building image: 13034980
building: Installing system dependencies
error: Building package: BH
## Begin Task Log ##############################################################
Quarto not found.
[2025-07-11T12:44:13.402829060+0000] Execute script: packages/build/units.sh
+ set -e
+ apt-get update -qq
W: http://cran.rstudio.com/bin/linux/ubuntu/jammy-cran40/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+ apt-get install -y libudunits2-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
libudunits2-0 libudunits2-data
The following NEW packages will be installed:
libudunits2-0 libudunits2-data libudunits2-dev
0 upgraded, 3 newly installed, 0 to remove and 227 not upgraded.
Need to get 433 kB of archives.
After this operation, 1064 kB of additional disk space will be used.
Get:1 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/universe amd64 libudunits2-data all 2.2.28-3 [19.0 kB]
Get:2 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/universe amd64 libudunits2-0 amd64 2.2.28-3 [50.3 kB]
Get:3 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/universe amd64 libudunits2-dev amd64 2.2.28-3 [364 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 433 kB in 0s (16.3 MB/s)
Selecting previously unselected package libudunits2-data.
(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 293173 files and directories currently installed.)
Preparing to unpack .../libudunits2-data_2.2.28-3_all.deb ...
Unpacking libudunits2-data (2.2.28-3) ...
Selecting previously unselected package libudunits2-0.
Preparing to unpack .../libudunits2-0_2.2.28-3_amd64.deb ...
Unpacking libudunits2-0 (2.2.28-3) ...
Selecting previously unselected package libudunits2-dev.
Preparing to unpack .../libudunits2-dev_2.2.28-3_amd64.deb ...
Unpacking libudunits2-dev (2.2.28-3) ...
Setting up libudunits2-data (2.2.28-3) ...
Setting up libudunits2-0 (2.2.28-3) ...
Setting up libudunits2-dev (2.2.28-3) ...
Processing triggers for install-info (6.8-4build1) ...
Processing triggers for libc-bin (2.35-0ubuntu3.7) ...
[2025-07-11T12:44:18.051124228+0000] Execute script: packages/build/textshaping.sh
+ set -e
+ apt-get update -qq
W: http://cran.rstudio.com/bin/linux/ubuntu/jammy-cran40/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+ apt-get install -y libharfbuzz-dev libfribidi-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
gir1.2-harfbuzz-0.0 libgraphite2-dev libharfbuzz-gobject0 libharfbuzz-icu0
libharfbuzz0b
Suggested packages:
libgraphite2-utils
The following NEW packages will be installed:
gir1.2-harfbuzz-0.0 libfribidi-dev libgraphite2-dev libharfbuzz-dev
libharfbuzz-gobject0 libharfbuzz-icu0
The following packages will be upgraded:
libharfbuzz0b
1 upgraded, 6 newly installed, 0 to remove and 226 not upgraded.
Need to get 1050 kB of archives.
After this operation, 3823 kB of additional disk space will be used.
Get:1 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy-updates/main amd64 libharfbuzz0b amd64 2.7.4-1ubuntu3.2 [353 kB]
Get:2 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy-updates/main amd64 gir1.2-harfbuzz-0.0 amd64 2.7.4-1ubuntu3.2 [31.6 kB]
Get:3 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy-updates/main amd64 libfribidi-dev amd64 1.0.8-2ubuntu3.1 [64.8 kB]
Get:4 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/main amd64 libgraphite2-dev amd64 1.3.14-1build2 [14.7 kB]
Get:5 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy-updates/main amd64 libharfbuzz-icu0 amd64 2.7.4-1ubuntu3.2 [5890 B]
Get:6 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy-updates/main amd64 libharfbuzz-gobject0 amd64 2.7.4-1ubuntu3.2 [26.0 kB]
Get:7 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy-updates/main amd64 libharfbuzz-dev amd64 2.7.4-1ubuntu3.2 [554 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 1050 kB in 0s (27.2 MB/s)
(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 293213 files and directories currently installed.)
Preparing to unpack .../0-libharfbuzz0b_2.7.4-1ubuntu3.2_amd64.deb ...
Unpacking libharfbuzz0b:amd64 (2.7.4-1ubuntu3.2) over (2.7.4-1ubuntu3.1) ...
Selecting previously unselected package gir1.2-harfbuzz-0.0:amd64.
Preparing to unpack .../1-gir1.2-harfbuzz-0.0_2.7.4-1ubuntu3.2_amd64.deb ...
Unpacking gir1.2-harfbuzz-0.0:amd64 (2.7.4-1ubuntu3.2) ...
Selecting previously unselected package libfribidi-dev:amd64.
Preparing to unpack .../2-libfribidi-dev_1.0.8-2ubuntu3.1_amd64.deb ...
Unpacking libfribidi-dev:amd64 (1.0.8-2ubuntu3.1) ...
Selecting previously unselected package libgraphite2-dev:amd64.
Preparing to unpack .../3-libgraphite2-dev_1.3.14-1build2_amd64.deb ...
Unpacking libgraphite2-dev:amd64 (1.3.14-1build2) ...
Selecting previously unselected package libharfbuzz-icu0:amd64.
Preparing to unpack .../4-libharfbuzz-icu0_2.7.4-1ubuntu3.2_amd64.deb ...
Unpacking libharfbuzz-icu0:amd64 (2.7.4-1ubuntu3.2) ...
Selecting previously unselected package libharfbuzz-gobject0:amd64.
Preparing to unpack .../5-libharfbuzz-gobject0_2.7.4-1ubuntu3.2_amd64.deb ...
Unpacking libharfbuzz-gobject0:amd64 (2.7.4-1ubuntu3.2) ...
Selecting previously unselected package libharfbuzz-dev:amd64.
Preparing to unpack .../6-libharfbuzz-dev_2.7.4-1ubuntu3.2_amd64.deb ...
Unpacking libharfbuzz-dev:amd64 (2.7.4-1ubuntu3.2) ...
Setting up libfribidi-dev:amd64 (1.0.8-2ubuntu3.1) ...
Setting up libgraphite2-dev:amd64 (1.3.14-1build2) ...
Setting up libharfbuzz0b:amd64 (2.7.4-1ubuntu3.2) ...
Setting up libharfbuzz-icu0:amd64 (2.7.4-1ubuntu3.2) ...
Setting up libharfbuzz-gobject0:amd64 (2.7.4-1ubuntu3.2) ...
Setting up gir1.2-harfbuzz-0.0:amd64 (2.7.4-1ubuntu3.2) ...
Setting up libharfbuzz-dev:amd64 (2.7.4-1ubuntu3.2) ...
Processing triggers for libc-bin (2.35-0ubuntu3.7) ...
[2025-07-11T12:44:21.924353492+0000] Execute script: packages/build/igraph.sh
+ set -e
+ apt-get update -qq
W: http://cran.rstudio.com/bin/linux/ubuntu/jammy-cran40/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+ apt-get install -y libglpk-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
libamd2 libbtf1 libcamd2 libccolamd2 libcholmod3 libcolamd2 libcxsparse3
libglpk40 libgmp-dev libgmpxx4ldbl libgraphblas-dev libgraphblas6 libklu1
libldl2 libmetis5 libmongoose2 librbio2 libsliplu1 libspqr2
libsuitesparse-dev libsuitesparseconfig5 libumfpack5
Suggested packages:
libiodbc2-dev gmp-doc libgmp10-doc libmpfr-dev
The following NEW packages will be installed:
libamd2 libbtf1 libcamd2 libccolamd2 libcholmod3 libcolamd2 libcxsparse3
libglpk-dev libglpk40 libgmp-dev libgmpxx4ldbl libgraphblas-dev
libgraphblas6 libklu1 libldl2 libmetis5 libmongoose2 librbio2 libsliplu1
libspqr2 libsuitesparse-dev libsuitesparseconfig5 libumfpack5
0 upgraded, 23 newly installed, 0 to remove and 226 not upgraded.
Need to get 23.5 MB of archives.
After this operation, 174 MB of additional disk space will be used.
Get:1 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/main amd64 libsuitesparseconfig5 amd64 1:5.10.1+dfsg-4build1 [10.4 kB]
Get:2 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/universe amd64 libamd2 amd64 1:5.10.1+dfsg-4build1 [21.6 kB]
Get:3 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/universe amd64 libbtf1 amd64 1:5.10.1+dfsg-4build1 [12.1 kB]
Get:4 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/universe amd64 libcamd2 amd64 1:5.10.1+dfsg-4build1 [23.3 kB]
Get:5 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/universe amd64 libccolamd2 amd64 1:5.10.1+dfsg-4build1 [25.2 kB]
Get:6 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/main amd64 libcolamd2 amd64 1:5.10.1+dfsg-4build1 [18.0 kB]
Get:7 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/universe amd64 libmetis5 amd64 5.1.0.dfsg-7build2 [181 kB]
Get:8 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/universe amd64 libcholmod3 amd64 1:5.10.1+dfsg-4build1 [346 kB]
Get:9 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/universe amd64 libcxsparse3 amd64 1:5.10.1+dfsg-4build1 [70.8 kB]
Get:10 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/universe amd64 libglpk40 amd64 5.0-1 [361 kB]
Get:11 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/main amd64 libgmpxx4ldbl amd64 2:6.2.1+dfsg-3ubuntu1 [9580 B]
Get:12 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/main amd64 libgmp-dev amd64 2:6.2.1+dfsg-3ubuntu1 [337 kB]
Get:13 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/universe amd64 libklu1 amd64 1:5.10.1+dfsg-4build1 [77.6 kB]
Get:14 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/universe amd64 libldl2 amd64 1:5.10.1+dfsg-4build1 [11.7 kB]
Get:15 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/universe amd64 libmongoose2 amd64 1:5.10.1+dfsg-4build1 [33.5 kB]
Get:16 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/universe amd64 libumfpack5 amd64 1:5.10.1+dfsg-4build1 [250 kB]
Get:17 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/universe amd64 librbio2 amd64 1:5.10.1+dfsg-4build1 [26.6 kB]
Get:18 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/universe amd64 libspqr2 amd64 1:5.10.1+dfsg-4build1 [71.6 kB]
Get:19 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/universe amd64 libsliplu1 amd64 1:5.10.1+dfsg-4build1 [37.1 kB]
Get:20 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/universe amd64 libsuitesparse-dev amd64 1:5.10.1+dfsg-4build1 [1058 kB]
Get:21 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/universe amd64 libglpk-dev amd64 5.0-1 [430 kB]
Get:22 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/universe amd64 libgraphblas6 amd64 6.1.4+dfsg-2 [20.1 MB]
Get:23 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy/universe amd64 libgraphblas-dev amd64 6.1.4+dfsg-2 [54.4 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 23.5 MB in 0s (92.0 MB/s)
Selecting previously unselected package libsuitesparseconfig5:amd64.
(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 293348 files and directories currently installed.)
Preparing to unpack .../00-libsuitesparseconfig5_1%3a5.10.1+dfsg-4build1_amd64.deb ...
Unpacking libsuitesparseconfig5:amd64 (1:5.10.1+dfsg-4build1) ...
Selecting previously unselected package libamd2:amd64.
Preparing to unpack .../01-libamd2_1%3a5.10.1+dfsg-4build1_amd64.deb ...
Unpacking libamd2:amd64 (1:5.10.1+dfsg-4build1) ...
Selecting previously unselected package libbtf1:amd64.
Preparing to unpack .../02-libbtf1_1%3a5.10.1+dfsg-4build1_amd64.deb ...
Unpacking libbtf1:amd64 (1:5.10.1+dfsg-4build1) ...
Selecting previously unselected package libcamd2:amd64.
Preparing to unpack .../03-libcamd2_1%3a5.10.1+dfsg-4build1_amd64.deb ...
Unpacking libcamd2:amd64 (1:5.10.1+dfsg-4build1) ...
Selecting previously unselected package libccolamd2:amd64.
Preparing to unpack .../04-libccolamd2_1%3a5.10.1+dfsg-4build1_amd64.deb ...
Unpacking libccolamd2:amd64 (1:5.10.1+dfsg-4build1) ...
Selecting previously unselected package libcolamd2:amd64.
Preparing to unpack .../05-libcolamd2_1%3a5.10.1+dfsg-4build1_amd64.deb ...
Unpacking libcolamd2:amd64 (1:5.10.1+dfsg-4build1) ...
Selecting previously unselected package libmetis5:amd64.
Preparing to unpack .../06-libmetis5_5.1.0.dfsg-7build2_amd64.deb ...
Unpacking libmetis5:amd64 (5.1.0.dfsg-7build2) ...
Selecting previously unselected package libcholmod3:amd64.
Preparing to unpack .../07-libcholmod3_1%3a5.10.1+dfsg-4build1_amd64.deb ...
Unpacking libcholmod3:amd64 (1:5.10.1+dfsg-4build1) ...
Selecting previously unselected package libcxsparse3:amd64.
Preparing to unpack .../08-libcxsparse3_1%3a5.10.1+dfsg-4build1_amd64.deb ...
Unpacking libcxsparse3:amd64 (1:5.10.1+dfsg-4build1) ...
Selecting previously unselected package libglpk40:amd64.
Preparing to unpack .../09-libglpk40_5.0-1_amd64.deb ...
Unpacking libglpk40:amd64 (5.0-1) ...
Selecting previously unselected package libgmpxx4ldbl:amd64.
Preparing to unpack .../10-libgmpxx4ldbl_2%3a6.2.1+dfsg-3ubuntu1_amd64.deb ...
Unpacking libgmpxx4ldbl:amd64 (2:6.2.1+dfsg-3ubuntu1) ...
Selecting previously unselected package libgmp-dev:amd64.
Preparing to unpack .../11-libgmp-dev_2%3a6.2.1+dfsg-3ubuntu1_amd64.deb ...
Unpacking libgmp-dev:amd64 (2:6.2.1+dfsg-3ubuntu1) ...
Selecting previously unselected package libklu1:amd64.
Preparing to unpack .../12-libklu1_1%3a5.10.1+dfsg-4build1_amd64.deb ...
Unpacking libklu1:amd64 (1:5.10.1+dfsg-4build1) ...
Selecting previously unselected package libldl2:amd64.
Preparing to unpack .../13-libldl2_1%3a5.10.1+dfsg-4build1_amd64.deb ...
Unpacking libldl2:amd64 (1:5.10.1+dfsg-4build1) ...
Selecting previously unselected package libmongoose2:amd64.
Preparing to unpack .../14-libmongoose2_1%3a5.10.1+dfsg-4build1_amd64.deb ...
Unpacking libmongoose2:amd64 (1:5.10.1+dfsg-4build1) ...
Selecting previously unselected package libumfpack5:amd64.
Preparing to unpack .../15-libumfpack5_1%3a5.10.1+dfsg-4build1_amd64.deb ...
Unpacking libumfpack5:amd64 (1:5.10.1+dfsg-4build1) ...
Selecting previously unselected package librbio2:amd64.
Preparing to unpack .../16-librbio2_1%3a5.10.1+dfsg-4build1_amd64.deb ...
Unpacking librbio2:amd64 (1:5.10.1+dfsg-4build1) ...
Selecting previously unselected package libspqr2:amd64.
Preparing to unpack .../17-libspqr2_1%3a5.10.1+dfsg-4build1_amd64.deb ...
Unpacking libspqr2:amd64 (1:5.10.1+dfsg-4build1) ...
Selecting previously unselected package libsliplu1:amd64.
Preparing to unpack .../18-libsliplu1_1%3a5.10.1+dfsg-4build1_amd64.deb ...
Unpacking libsliplu1:amd64 (1:5.10.1+dfsg-4build1) ...
Selecting previously unselected package libsuitesparse-dev:amd64.
Preparing to unpack .../19-libsuitesparse-dev_1%3a5.10.1+dfsg-4build1_amd64.deb ...
Unpacking libsuitesparse-dev:amd64 (1:5.10.1+dfsg-4build1) ...
Selecting previously unselected package libglpk-dev:amd64.
Preparing to unpack .../20-libglpk-dev_5.0-1_amd64.deb ...
Unpacking libglpk-dev:amd64 (5.0-1) ...
Selecting previously unselected package libgraphblas6:amd64.
Preparing to unpack .../21-libgraphblas6_6.1.4+dfsg-2_amd64.deb ...
Unpacking libgraphblas6:amd64 (6.1.4+dfsg-2) ...
Selecting previously unselected package libgraphblas-dev:amd64.
Preparing to unpack .../22-libgraphblas-dev_6.1.4+dfsg-2_amd64.deb ...
Unpacking libgraphblas-dev:amd64 (6.1.4+dfsg-2) ...
Setting up libgraphblas6:amd64 (6.1.4+dfsg-2) ...
Setting up libldl2:amd64 (1:5.10.1+dfsg-4build1) ...
Setting up libmetis5:amd64 (5.1.0.dfsg-7build2) ...
Setting up libbtf1:amd64 (1:5.10.1+dfsg-4build1) ...
Setting up libgraphblas-dev:amd64 (6.1.4+dfsg-2) ...
Setting up libgmpxx4ldbl:amd64 (2:6.2.1+dfsg-3ubuntu1) ...
Setting up libcxsparse3:amd64 (1:5.10.1+dfsg-4build1) ...
Setting up libsuitesparseconfig5:amd64 (1:5.10.1+dfsg-4build1) ...
Setting up librbio2:amd64 (1:5.10.1+dfsg-4build1) ...
Setting up libamd2:amd64 (1:5.10.1+dfsg-4build1) ...
Setting up libgmp-dev:amd64 (2:6.2.1+dfsg-3ubuntu1) ...
Setting up libcolamd2:amd64 (1:5.10.1+dfsg-4build1) ...
Setting up libsliplu1:amd64 (1:5.10.1+dfsg-4build1) ...
Setting up libcamd2:amd64 (1:5.10.1+dfsg-4build1) ...
Setting up libmongoose2:amd64 (1:5.10.1+dfsg-4build1) ...
Setting up libglpk40:amd64 (5.0-1) ...
Setting up libklu1:amd64 (1:5.10.1+dfsg-4build1) ...
Setting up libccolamd2:amd64 (1:5.10.1+dfsg-4build1) ...
Setting up libcholmod3:amd64 (1:5.10.1+dfsg-4build1) ...
Setting up libspqr2:amd64 (1:5.10.1+dfsg-4build1) ...
Setting up libumfpack5:amd64 (1:5.10.1+dfsg-4build1) ...
Setting up libsuitesparse-dev:amd64 (1:5.10.1+dfsg-4build1) ...
Setting up libglpk-dev:amd64 (5.0-1) ...
Processing triggers for libc-bin (2.35-0ubuntu3.7) ...
[2025-07-11T12:44:27.307130680+0000] Execute script: packages/build/sf.sh
+ set -e
++ lsb_release -cs
+ OS_CODENAME=jammy
+ '[' jammy == xenial ']'
+ apt-get update -qq
W: http://cran.rstudio.com/bin/linux/ubuntu/jammy-cran40/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+ apt-get install -y libudunits2-dev libgdal-dev libgeos-dev libproj-dev
Reading package lists...
Building dependency tree...
Reading state information...
libgdal-dev is already the newest version (3.4.1+dfsg-1build4).
libgeos-dev is already the newest version (3.10.2-1).
libgeos-dev set to manually installed.
libproj-dev is already the newest version (8.2.1-1).
libudunits2-dev is already the newest version (2.2.28-3).
0 upgraded, 0 newly installed, 0 to remove and 226 not upgraded.
[2025-07-11T12:44:29.971233528+0000] Execute script: packages/build/ragg.sh
+ set -e
+ apt-get update -qq
W: http://cran.rstudio.com/bin/linux/ubuntu/jammy-cran40/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+ apt-get install -y fonts-noto-color-emoji libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev libharfbuzz-dev libfribidi-dev
Reading package lists...
Building dependency tree...
Reading state information...
libjpeg-dev is already the newest version (8c-2ubuntu10).
libjpeg-dev set to manually installed.
libpng-dev is already the newest version (1.6.37-3build5).
libpng-dev set to manually installed.
libfribidi-dev is already the newest version (1.0.8-2ubuntu3.1).
libharfbuzz-dev is already the newest version (2.7.4-1ubuntu3.2).
The following additional packages will be installed:
libfreetype-dev libfreetype6
Suggested packages:
freetype2-doc
The following NEW packages will be installed:
libtiff5-dev
The following packages will be upgraded:
fonts-noto-color-emoji libfreetype-dev libfreetype6 libfreetype6-dev
4 upgraded, 1 newly installed, 0 to remove and 222 not upgraded.
Need to get 11.0 MB of archives.
After this operation, 131 kB of additional disk space will be used.
Get:1 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy-updates/main amd64 fonts-noto-color-emoji all 2.047-0ubuntu0.22.04.1 [10.0 MB]
Get:2 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy-updates/main amd64 libfreetype-dev amd64 2.11.1+dfsg-1ubuntu0.3 [555 kB]
Get:3 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy-updates/main amd64 libfreetype6-dev amd64 2.11.1+dfsg-1ubuntu0.3 [8298 B]
Get:4 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy-updates/main amd64 libfreetype6 amd64 2.11.1+dfsg-1ubuntu0.3 [388 kB]
Get:5 http://us-east-1.ec2.archive.ubuntu.com/ubuntu jammy-updates/main amd64 libtiff5-dev amd64 4.3.0-6ubuntu0.10 [2096 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 11.0 MB in 0s (96.8 MB/s)
(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 293590 files and directories currently installed.)
Preparing to unpack .../fonts-noto-color-emoji_2.047-0ubuntu0.22.04.1_all.deb ...
Unpacking fonts-noto-color-emoji (2.047-0ubuntu0.22.04.1) over (2.042-0ubuntu0.22.04.1) ...
Preparing to unpack .../libfreetype-dev_2.11.1+dfsg-1ubuntu0.3_amd64.deb ...
Unpacking libfreetype-dev:amd64 (2.11.1+dfsg-1ubuntu0.3) over (2.11.1+dfsg-1ubuntu0.2) ...
Preparing to unpack .../libfreetype6-dev_2.11.1+dfsg-1ubuntu0.3_amd64.deb ...
Unpacking libfreetype6-dev:amd64 (2.11.1+dfsg-1ubuntu0.3) over (2.11.1+dfsg-1ubuntu0.2) ...
Preparing to unpack .../libfreetype6_2.11.1+dfsg-1ubuntu0.3_amd64.deb ...
Unpacking libfreetype6:amd64 (2.11.1+dfsg-1ubuntu0.3) over (2.11.1+dfsg-1ubuntu0.2) ...
Selecting previously unselected package libtiff5-dev:amd64.
Preparing to unpack .../libtiff5-dev_4.3.0-6ubuntu0.10_amd64.deb ...
Unpacking libtiff5-dev:amd64 (4.3.0-6ubuntu0.10) ...
Setting up fonts-noto-color-emoji (2.047-0ubuntu0.22.04.1) ...
Setting up libtiff5-dev:amd64 (4.3.0-6ubuntu0.10) ...
Setting up libfreetype6:amd64 (2.11.1+dfsg-1ubuntu0.3) ...
Setting up libfreetype-dev:amd64 (2.11.1+dfsg-1ubuntu0.3) ...
Setting up libfreetype6-dev:amd64 (2.11.1+dfsg-1ubuntu0.3) ...
Processing triggers for libc-bin (2.35-0ubuntu3.7) ...
Processing triggers for fontconfig (2.13.1-4.2ubuntu5) ... ## End Task Log ################################################################
Erreur : Unhandled Exception: child_task=1567116915 child_task_status=failed: Error building image: Error fetching BH (1.87.0-1) source. Error downloading package source: [Errno -5] No address associated with hostname
De plus : Messages d'avis :
1: valeur uid incorrecte remplacée par celle pour l'utilisateur 'nobody'
2: valeur gid incorrecte remplacée par celle pour l'utilisateur 'nobody'
Exécution arrêtée
my sessioninfo is
> sessionInfo()
R version 4.4.1 (2024-06-14)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 20.04.6 LTS
Matrix products: default
BLAS/LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.8.so; LAPACK version 3.9.0
locale:
[1] LC_CTYPE=fr_FR.UTF-8 LC_NUMERIC=C LC_TIME=fr_FR.UTF-8 LC_COLLATE=fr_FR.UTF-8
[5] LC_MONETARY=fr_FR.UTF-8 LC_MESSAGES=fr_FR.UTF-8 LC_PAPER=fr_FR.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C
time zone: Europe/Paris
tzcode source: system (glibc)
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] digest_0.6.35 utf8_1.2.4 magrittr_2.0.3 glue_1.7.0 tibble_3.2.1 pkgconfig_2.0.3 lifecycle_1.0.4
[8] cli_3.6.2 fansi_1.0.6 askpass_1.2.0 openssl_2.2.0 vctrs_0.6.5 rsconnect_1.5.0 compiler_4.4.1
[15] purrr_1.0.2 rstudioapi_0.16.0 tools_4.4.1 curl_5.2.1 pillar_1.9.0 crayon_1.5.2 rlang_1.1.4
[22] jsonlite_1.8.8 fs_1.6.4 usethis_2.2.3
I tried to upgrade renv, BH, rcpp and rsconnect, quarto to the latest version, but same error (sometimes an other BH version is undownloadable) each time
I tried to deploy from a ubuntu 22.04 and it was ok with this sessioninfo
> sessionInfo()
R version 4.4.1 (2024-06-14)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 22.04.5 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.20.so; LAPACK version 3.10.0
locale:
[1] LC_CTYPE=fr_FR.UTF-8 LC_NUMERIC=C LC_TIME=fr_FR.UTF-8 LC_COLLATE=fr_FR.UTF-8
[5] LC_MONETARY=fr_FR.UTF-8 LC_MESSAGES=fr_FR.UTF-8 LC_PAPER=fr_FR.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C
time zone: Europe/Paris
tzcode source: system (glibc)
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_4.4.1 tools_4.4.1
The problem is that it's not a ready platform for users
Do you have any idea about what is going on ?
thanks
Olivier