I am trying to download an NCBI GEO database into R-studio via the package, GEOquery. I am using the following code:
library(GEOquery)
Blood_Transcriptome <- "GSE39445"
gse <- getGEO(Blood_Transcriptome)
It finds the corresponding file, but I receive this error message:
Found 1 file(s)
GSE39445_series_matrix.txt.gz
Timeout was reached: Operation timed out after 120000 milliseconds with 89063424 out of 99903990 bytes receivedFile stored at:
C:\Users\ss03940\AppData\Local\Temp\Rtmp4OrdbQ/GSE39445_series_matrix.txt.gz
Error in downloadFile(url, destfile = destfile, mode = "wb") :
Failed to download C:\Users\ss03940\AppData\Local\Temp\Rtmp4OrdbQ/GSE39445_series_matrix.txt.gz!
I've tried downloading the file separately online, but I keep getting a connection network failure. The file is 3.7gb.
Can anyone help with this?
Thanks