I get the following error when attempting to deploy my shiny apps:
Error in curl::curl_fetch_memory(url, handle = handle) :
Send failure: Connection was reset
Calls: <Anonymous> ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
My app does not exceed the specified memory limit (8GB) and I am at loss to what could be the problem.
Grateful for any advice.
Deployment diagnostics:
----- Deployment error -----
Error in curl::curl_fetch_memory(url, handle = handle) :
Send failure: Connection was reset
Calls: <Anonymous> ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
----- Error stack trace -----
11: stop(e)
10: value[[3L]](cond)
9: tryCatchOne(expr, names, parentenv, handlers[[1L]])
8: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({
response <- curl::curl_fetch_memory(url, handle = handle)
}, error = function(e, ...) {
if (identical(e$message, "Callback aborted") || identical(e$message,
"transfer closed with outstanding read data remaining"))
return(NULL)
else stop(e)
})
6: system.time(gcFirst = FALSE, tryCatch({
response <- curl::curl_fetch_memory(url, handle = handle)
}, error = function(e, ...) {
if (identical(e$message, "Callback aborted") || identical(e$message,
"transfer closed with outstanding read data remaining"))
return(NULL)
else stop(e)
}))
5: http(presigned_service$protocol, presigned_service$host, presigned_service$port,
"PUT", presigned_service$path, headers, headers$`Content-Type`,
bundlePath)
4: uploadBundle(bundle, bundleSize, bundlePath)
3: force(code)
2: withStatus(paste0("Uploading bundle for ", assetTypeName, ": ",
application$id), {
python <- getPythonForTarget(python, accountDetails)
bundlePath <- bundleApp(target$appName, appDir, appFiles,
appPrimaryDoc, assetTypeName, contentCategory, verbose,
python)
if (isShinyapps(accountDetails)) {
bundleSize <- file.info(bundlePath)$size
checksum <- fileMD5.as.string(bundlePath)
bundle <- client$createBundle(application$id, "application/x-tar",
bundleSize, checksum)
if (verbose)
timestampedLog("Starting upload now")
if (!uploadBundle(bundle, bundleSize, bundlePath)) {
stop("Could not upload file.")
}
if (verbose)
timestampedLog("Upload complete")
response <- client$updateBundleStatus(bundle$id, status = "ready")
bundle <- client$getBundle(bundle$id)
}
else {
bundle <- client$uploadApplication(application$id, bundlePath)
}
})
1: rsconnect::deployApp(appDir = "C:/Users/Anamria Elek/Desktop/cross_sp_app",
appFileManifest = "C:/Users/ANAMRI~1/AppData/Local/Temp/c144-9746-f1e5-e7b8",
appPrimaryDoc = "app-tree.R", account = "sebe-lab", server = "shinyapps.io",
appName = "cross_sp_tree", appId = 2623128, launch.browser = function(url) {
message("Deployment completed: ", url)
}, lint = FALSE, metadata = list(asMultiple = FALSE, asStatic = FALSE,
ignoredFiles = "app-cross-sp.R|config.yaml"), logLevel = "verbose")
Output of rsconnect::appDependencies():
package version source
1 BH 1.72.0-3 CRAN
2 Biobase 2.46.0 Bioconductor
3 BiocGenerics 0.32.0 Bioconductor
4 BiocManager 1.30.10 CRAN
5 ComplexHeatmap 2.5.3 github
6 DT 0.12 CRAN
7 GetoptLong 0.1.8 CRAN
8 GlobalOptions 0.1.2 CRAN
9 IRanges 2.20.2 Bioconductor
10 MASS 7.3-51.4 CRAN
11 Matrix 1.2-18 CRAN
12 R6 2.4.1 CRAN
13 RColorBrewer 1.1-2 CRAN
14 Rcpp 1.0.5 CRAN
15 S4Vectors 0.24.4 Bioconductor
16 animation 2.6 CRAN
17 ape 5.3 CRAN
18 askpass 1.1 CRAN
19 assertthat 0.2.1 CRAN
20 backports 1.1.7 CRAN
21 base64enc 0.1-3 CRAN
22 callr 3.4.2 CRAN
23 circlize 0.4.10 CRAN
24 cli 2.0.2 CRAN
25 clipr 0.7.0 CRAN
26 clue 0.3-57 CRAN
27 cluster 2.1.0 CRAN
28 clusterGeneration 1.3.4 CRAN
29 coda 0.19-3 CRAN
30 codetools 0.2-16 CRAN
31 colorspace 1.4-1 CRAN
32 combinat 0.0-8 CRAN
33 cpp11 0.2.1 CRAN
34 crayon 1.3.4 CRAN
35 crosstalk 1.0.0 CRAN
36 curl 4.3 CRAN
37 data.table 1.12.8 CRAN
38 dendextend 1.13.4 CRAN
39 desc 1.2.0 CRAN
40 digest 0.6.25 CRAN
41 doParallel 1.0.15 CRAN
42 dplyr 0.8.5 CRAN
43 ellipsis 0.3.1 CRAN
44 evaluate 0.14 CRAN
45 expm 0.999-5 CRAN
46 fansi 0.4.1 CRAN
47 farver 2.0.3 CRAN
48 fastmap 1.0.1 CRAN
49 fastmatch 1.1-0 CRAN
50 foreach 1.4.8 CRAN
51 ggplot2 3.3.2 CRAN
52 ggtree 2.0.1 Bioconductor
53 glue 1.4.1 CRAN
54 gridExtra 2.3 CRAN
55 gtable 0.3.0 CRAN
56 gtools 3.8.1 CRAN
57 highr 0.8 CRAN
58 hms 0.5.3 CRAN
59 htmltools 0.4.0 CRAN
60 htmlwidgets 1.5.1 CRAN
61 httpuv 1.5.2 CRAN
62 httr 1.4.1 CRAN
63 igraph 1.2.5 CRAN
64 isoband 0.2.0 CRAN
65 iterators 1.0.12 CRAN
66 jsonlite 1.6.1 CRAN
67 kableExtra 1.1.0 CRAN
68 knitr 1.28 CRAN
69 labeling 0.3 CRAN
70 later 1.0.0 CRAN
71 lattice 0.20-38 CRAN
72 lazyeval 0.2.2 CRAN
73 lifecycle 0.2.0 CRAN
74 magick 2.3 CRAN
75 magrittr 1.5 CRAN
76 maps 3.3.0 CRAN
77 markdown 1.1 CRAN
78 mgcv 1.8-31 CRAN
79 mime 0.9 CRAN
80 mnormt 1.5-5 github
81 munsell 0.5.0 CRAN
82 nlme 3.1-142 CRAN
83 numDeriv 2016.8-1.1 CRAN
84 openssl 1.4.1 CRAN
85 phangorn 2.5.5 CRAN
86 phytools 0.7-47 CRAN
87 pillar 1.4.4 CRAN
88 pkgbuild 1.0.6 CRAN
89 pkgconfig 2.0.3 CRAN
90 pkgload 1.0.2 CRAN
91 plogr 0.2.0 CRAN
92 plotrix 3.7-8 CRAN
93 png 0.1-7 CRAN
94 praise 1.0.0 CRAN
95 prettyunits 1.1.1 CRAN
96 processx 3.4.2 CRAN
97 promises 1.1.0 CRAN
98 ps 1.3.2 CRAN
99 purrr 0.3.4 CRAN
100 quadprog 1.5-8 CRAN
101 readr 1.3.1 CRAN
102 rjson 0.2.20 CRAN
103 rlang 0.4.6 CRAN
104 rmarkdown 2.1 CRAN
105 rprojroot 1.3-2 CRAN
106 rstudioapi 0.11 CRAN
107 rvcheck 0.1.8 CRAN
108 rvest 0.3.5 CRAN
109 scales 1.1.0 CRAN
110 scatterplot3d 0.3-41 CRAN
111 selectr 0.4-2 CRAN
112 shape 1.4.4 CRAN
113 shiny 1.4.0.1 CRAN
114 shinyWidgets 0.5.3 CRAN
115 sourcetools 0.1.7 CRAN
116 stringi 1.4.6 CRAN
117 stringr 1.4.0 CRAN
118 sys 3.3 CRAN
119 testthat 2.3.2 CRAN
120 tibble 3.0.3 CRAN
121 tidyr 1.1.1 CRAN
122 tidyselect 1.1.0 CRAN
123 tidytree 0.3.2 CRAN
124 tinytex 0.20 CRAN
125 treeio 1.10.0 Bioconductor
126 utf8 1.1.4 CRAN
127 vctrs 0.3.0 CRAN
128 viridis 0.5.1 CRAN
129 viridisLite 0.3.0 CRAN
130 webshot 0.5.2 CRAN
131 withr 2.2.0 CRAN
132 xfun 0.12 CRAN
133 xml2 1.2.5 CRAN
134 xtable 1.8-4 CRAN
135 yaml 2.2.1 CRAN
136 zoo 1.8-7 CRAN