Hi,
I try to visualize data in Rstudio with the same code. I just update my R version as new function that I need to use is available only in R 4.2.0, but now when I try to plot figures everything is going to quartz and I cannot anymore directly save in jpg, svg, tiff from the same image, but only pdf.
Could you advise me what I need to do to be able again to use the function "export an image" from your Plots window
I try to use
dev.new(RStudioGD())
but I have an error message
Error in .Call("rs_createGD") :
C symbol name "rs_createGD" not in load table
This is my session.
> sessionInfo()
R version 4.2.0 (2022-04-22)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Monterey 12.3.1
Matrix products: default
LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] grid stats graphics grDevices utils datasets methods base
other attached packages:
[1] circlize_0.4.14 ComplexHeatmap_2.12.0
loaded via a namespace (and not attached):
[1] nlme_3.1-157 matrixStats_0.62.0 spatstat.sparse_2.1-1 doParallel_1.0.17 RcppAnnoy_0.0.19
[6] RColorBrewer_1.1-3 httr_1.4.3 sctransform_0.3.3 tools_4.2.0 utf8_1.2.2
[11] R6_2.5.1 irlba_2.3.5 rpart_4.1.16 KernSmooth_2.23-20 BiocGenerics_0.42.0
[16] uwot_0.1.11 mgcv_1.8-40 DBI_1.1.2 lazyeval_0.2.2 colorspace_2.0-3
[21] GetoptLong_1.0.5 tidyselect_1.1.2 gridExtra_2.3 compiler_4.2.0 plotly_4.10.0
[26] Seurat_4.1.0 scales_1.2.0 lmtest_0.9-40 spatstat.data_2.2-0 ggridges_0.5.3
[31] pbapply_1.5-0 goftest_1.2-3 stringr_1.4.0 digest_0.6.29 spatstat.utils_2.3-0
[36] pkgconfig_2.0.3 htmltools_0.5.2 parallelly_1.31.1 fastmap_1.1.0 GlobalOptions_0.1.2
[41] htmlwidgets_1.5.4 rlang_1.0.2 shiny_1.7.1 shape_1.4.6 generics_0.1.2
[46] zoo_1.8-10 jsonlite_1.8.0 ica_1.0-2 spatstat.random_2.2-0 dplyr_1.0.9
[51] magrittr_2.0.3 patchwork_1.1.1 Matrix_1.4-1 S4Vectors_0.34.0 Rcpp_1.0.8.3
[56] munsell_0.5.0 fansi_1.0.3 abind_1.4-5 reticulate_1.24 lifecycle_1.0.1
[61] stringi_1.7.6 MASS_7.3-57 Rtsne_0.16 plyr_1.8.7 parallel_4.2.0
[66] listenv_0.8.0 promises_1.2.0.1 ggrepel_0.9.1 crayon_1.5.1 miniUI_0.1.1.1
[71] deldir_1.0-6 lattice_0.20-45 cowplot_1.1.1 splines_4.2.0 tensor_1.5
[76] magick_2.7.3 pillar_1.7.0 igraph_1.3.1 rjson_0.2.21 spatstat.geom_2.4-0
[81] stats4_4.2.0 future.apply_1.9.0 reshape2_1.4.4 codetools_0.2-18 leiden_0.3.10
[86] glue_1.6.2 SeuratObject_4.0.4 data.table_1.14.2 foreach_1.5.2 png_0.1-7
[91] vctrs_0.4.1 httpuv_1.6.5 gtable_0.3.0 RANN_2.6.1 purrr_0.3.4
[96] spatstat.core_2.4-2 polyclip_1.10-0 tidyr_1.2.0 clue_0.3-60 scattermore_0.8
[101] future_1.25.0 assertthat_0.2.1 ggplot2_3.3.6 mime_0.12 xtable_1.8-4
[106] later_1.3.0 survival_3.3-1 viridisLite_0.4.0 tibble_3.1.7 iterators_1.0.14
[111] IRanges_2.30.0 cluster_2.1.3 globals_0.14.0 fitdistrplus_1.1-8 ellipsis_0.3.2
[116] ROCR_1.0-11