Hey all,
I have the following code for an LME:
IDRTlme <- lme(Score ~ Group*Condition, random = ~1|ID, data=IDRT)
I want to check the normality assumption, and so I have completed the following test:
shapiro.test(resid(IDRTlme))
Is this the correct way to undertake the Shapiro test on the output of an lme?
Would be so grateful for any help!
Here is the data IDRT:
structure(list(ID = c("1993", "1993", "1993", "1993", "1993",
"1993", "1997", "1997", "1997", "1997", "1997", "1997", "19998",
"19998", "19998", "19998", "19998", "19998", "3122", "3122",
"3122", "3122", "3122", "3122", "3152", "3152", "3152", "3152",
"3152", "3152", "3182", "3182", "3182", "3182", "3182", "3182",
"330", "330", "330", "330", "330", "330", "354", "354", "354",
"354", "354", "354", "363", "363", "363", "363", "363", "363",
"369", "369", "369", "369", "369", "369", "370", "370", "370",
"370", "370", "370", "375", "375", "375", "375", "375", "375",
"377", "377", "377", "377", "377", "377", "378", "378", "378",
"378", "378", "378", "379", "379", "379", "379", "379", "379",
"380", "380", "380", "380", "380", "380", "381", "381", "381",
"381", "381", "381", "3862", "3862", "3862", "3862", "3862",
"3862", "3872", "3872", "3872", "3872", "3872", "3872", "388",
"388", "388", "388", "388", "388", "390", "390", "390", "390",
"390", "390", "392", "392", "392", "392", "392", "392", "393",
"393", "393", "393", "393", "393", "394", "394", "394", "394",
"394", "394", "395", "395", "395", "395", "395", "395", "396",
"396", "396", "396", "396", "396", "399", "399", "399", "399",
"399", "399", "5512", "5512", "5512", "5512", "5512", "5512",
"382", "382", "382", "382", "382", "382", "1001", "1001", "1001",
"1001", "1001", "1001", "1002", "1002", "1002", "1002", "1002",
"1002", "1003", "1003", "1003", "1003", "1003", "1003", "1004",
"1004", "1004", "1004", "1004", "1004", "1005", "1005", "1005",
"1005", "1005", "1005", "1006", "1006", "1006", "1006", "1006",
"1006", "1007", "1007", "1007", "1007", "1007", "1007", "1008",
"1008", "1008", "1008", "1008", "1008", "1009", "1009", "1009",
"1009", "1009", "1009", "1012", "1012", "1012", "1012", "1012",
"1012", "1013", "1013", "1013", "1013", "1013", "1013", "1014",
"1014", "1014", "1014", "1014", "1014", "1015", "1015", "1015",
"1015", "1015", "1015", "1016", "1016", "1016", "1016", "1016",
"1016", "1017", "1017", "1017", "1017", "1017", "1017", "1020",
"1020", "1020", "1020", "1020", "1020", "1021", "1021", "1021",
"1021", "1021", "1021", "1024", "1024", "1024", "1024", "1024",
"1024", "1025", "1025", "1025", "1025", "1025", "1025", "1026",
"1026", "1026", "1026", "1026", "1026", "1027", "1027", "1027",
"1027", "1027", "1027", "1088", "1088", "1088", "1088", "1088",
"1088", "1192", "1192", "1192", "1192", "1192", "1192", "1422",
"1422", "1422", "1422", "1422", "1422", "1492", "1492", "1492",
"1492", "1492", "1492", "1592", "1592", "1592", "1592", "1592",
"1592", "1602", "1602", "1602", "1602", "1602", "1602", "1642",
"1642", "1642", "1642", "1642", "1642", "171", "171", "171",
"171", "171", "171", "1722", "1722", "1722", "1722", "1722",
"1722", "1732", "1732", "1732", "1732", "1732", "1732", "174",
"174", "174", "174", "174", "174", "175", "175", "175", "175",
"175", "175", "1752", "1752", "1752", "1752", "1752", "1752",
"1762", "1762", "1762", "1762", "1762", "1762", "1782", "1782",
"1782", "1782", "1782", "1782", "1802", "1802", "1802", "1802",
"1802", "1802", "182", "182", "182", "182", "182", "182", "184",
"184", "184", "184", "184", "184", "1852", "1852", "1852", "1852",
"1852", "1852", "186", "186", "186", "186", "186", "186", "187",
"187", "187", "187", "187", "187", "188", "188", "188", "188",
"188", "188", "1892", "1892", "1892", "1892", "1892", "1892",
"190", "190", "190", "190", "190", "190", "192", "192", "192",
"192", "192", "192", "1924", "1924", "1924", "1924", "1924",
"1924", "193", "193", "193", "193", "193", "193", "195", "195",
"195", "195", "195", "195", "196", "196", "196", "196", "196",
"196", "197", "197", "197", "197", "197", "197", "1982", "1982",
"1982", "1982", "1982", "1982", "1992", "1992", "1992", "1992",
"1992", "1992", "19922", "19922", "19922", "19922", "19922",
"19922", "1999", "1999", "1999", "1999", "1999", "1999", "19992",
"19992", "19992", "19992", "19992", "19992", "199924", "199924",
"199924", "199924", "199924", "199924", "199945", "199945", "199945",
"199945", "199945", "199945", "199949", "199949", "199949", "199949",
"199949", "199949", "199951", "199951", "199951", "199951", "199951",
"199951", "199952", "199952", "199952", "199952", "199952", "199952",
"199j2", "199j2", "199j2", "199j2", "199j2", "199j2", "490",
"490", "490", "490", "490", "490", "181", "181", "181", "181",
"181", "181", "3812", "3812", "3812", "3812", "3812", "3812",
"199950", "199950", "199950", "199950", "199950", "199950", "191",
"191", "191", "191", "191", "191"), Condition = structure(c(1L,
2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L,
6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L,
4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L,
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2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L,
6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L,
4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L,
2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L,
6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L,
4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L,
2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L,
6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L,
4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L,
2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L,
6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L,
4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L,
2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L,
6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L,
4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L,
2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L,
6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L,
4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L,
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4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L), .Label = c("neutral",
"neutral_social", "no_money", "positive_social", "selfharm",
"win_money"), class = "factor"), Score = c(0.221611076, 0.206888887611111,
0.2319999696, 0.228521740956522, 0.206187486625, 0.220866648533333,
0.227608773956522, 0.241291721625, 0.24412006376, 0.238473741684211,
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0.254225776967742, 0.250256428333333, 0.256172385758621, 0.258117654705882,
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