I encounter an installation error while install.packages("restfulr") on Posit Workbench. It is hosted on RedHat 8 server and installed R 4.4.0 and R 4.2.1. The error posted below:
> install.packages("restfulr")
Installing package into ‘/staging/home/csu03/R/library/4.2’
(as ‘lib’ is unspecified)
trying URL 'https://cran.rstudio.com/src/contrib/restfulr_0.0.15.tar.gz'
Content type 'application/x-gzip' length 15033 bytes (14 KB)
==================================================
downloaded 14 KB
* installing *source* package ‘restfulr’ ...
** package ‘restfulr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -I"/opt/R/4.2.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o
gcc -I"/opt/R/4.2.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c raggedListToDF.c -o raggedListToDF.o
gcc -shared -L/opt/R/4.2.1/lib/R/lib -L/usr/local/lib -o restfulr.so init.o raggedListToDF.o -L/opt/R/4.2.1/lib/R/lib -lR
installing to /staging/home/csu03/R/library/4.2/00LOCK-restfulr/00new/restfulr/libs
** R
** inst
** byte-compile and prepare package for lazy loading
sh: line 1: 764726 Segmentation fault R_TESTS= '/opt/R/4.2.1/lib/R/bin/R' --no-save --no-restore --no-echo 2>&1 < '/tmp/RtmpPGKvGt/filebaac57270b9eb'
*** caught segfault ***
address 0x7f1199f29090, cause 'invalid permissions'
Traceback:
1: fun(libname, pkgname)
2: doTryCatch(return(expr), name, parentenv, handler)
3: tryCatchOne(expr, names, parentenv, handlers[[1L]])
4: tryCatchList(expr, classes, parentenv, handlers)
5: tryCatch(fun(libname, pkgname), error = identity)
6: runHook(".onLoad", env, package.lib, package)
7: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
8: asNamespace(ns)
9: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
10: loadNamespace(package = package, lib.loc = lib.loc, keep.source = keep.source, keep.parse.data = keep.parse.data, partial = TRUE)
11: withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage"))
12: suppressPackageStartupMessages(loadNamespace(package = package, lib.loc = lib.loc, keep.source = keep.source, keep.parse.data = keep.parse.data, partial = TRUE))
13: code2LazyLoadDB(package, lib.loc = lib.loc, keep.source = keep.source, keep.parse.data = keep.parse.data, compress = compress, set.install.dir = set.install.dir)
14: tools:::makeLazyLoading("restfulr", "/staging/home/csu03/R/library/4.2/00LOCK-restfulr/00new", keep.source = FALSE, keep.parse.data = FALSE, set.install.dir = "/staging/home/csu03/R/library/4.2/restfulr")
An irrecoverable exception occurred. R is aborting now ...
ERROR: lazy loading failed for package ‘restfulr’
* removing ‘/staging/home/csu03/R/library/4.2/restfulr’
* restoring previous ‘/staging/home/csu03/R/library/4.2/restfulr’
Warning in install.packages :
installation of package ‘restfulr’ had non-zero exit status
The downloaded source packages are in
‘/tmp/RtmpDGJBXZ/downloaded_packages’
I have written permission to the used lib location (/staging/home/csu03/R/library/4.2/). The issue is not specific to {restfulr} installation or R version. For some packages (but not all), it result in the same error. I also tested on R 4.4.0, the same error occur.
I want to know what the error means and what i can do to fix it.