Can't deploy an app with library Seurat

shiny
1

Hi,

I am trying to deploy an app that uses a package called Seurat, which is available from CRAN. When I tried to deploy it on shinyapps.io, rsconnect threw the following error:

Preparing to deploy application...DONE
Uploading bundle for application: 1942103...DONE
Deploying bundle: 2876162 for application: 1942103 ...
Waiting for task: 702752922
building: Parsing manifest
################################ Begin Task Log ################################
################################# End Task Log #################################
Error: Unhandled Exception: Child Task 702752924 failed: Error parsing manifest: Unable to determine package source for Bioconductor package Seurat: Repository must be specified

Seurat is not a bioconductor package. Still I specified the Bioconductor repository using

options(repos = BiocManager::repositories())

but this did not resolve the issue. Can you please advise on what to do?

Thanks.

2

I noticed you posted this as well on github and it's resolved.
Please mention this a next time, so people don't need to spend time on it.

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