bookdown0.9 in centos7.6 render the html files abnormal

kakaymi · February 28, 2019, 11:27pm

use the bookdown:render_book function，the same rmd and yml files，the same rstudio server,the same lang is zh_CN.UTF-8,and the same rmarkdown:pandoc_version,the same knitr,with the centos 6.1 or 6.5,the output html files's head content(meta,og:title,content) is normal,but with the centos 7.6, the head content is abnormal: adding a | character before the content (specially the content is unicode like chinese,but english is normal.)
i would copy the sessioninfo later,thanks.

(1)centOS 6.5

sessionInfo()
R version 3.5.1 (2018-07-02)
Platform: x86_64-redhat-linux-gnu (64-bit)
Running under: CentOS release 6.5 (Final)

Matrix products: default
BLAS: /usr/lib64/R/lib/libRblas.so
LAPACK: /usr/lib64/R/lib/libRlapack.so

locale:
[1] LC_CTYPE=zh_CN.UTF-8 LC_NUMERIC=C
[3] LC_TIME=zh_CN.UTF-8 LC_COLLATE=zh_CN.UTF-8
[5] LC_MONETARY=zh_CN.UTF-8 LC_MESSAGES=zh_CN.UTF-8
[7] LC_PAPER=zh_CN.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=zh_CN.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats graphics grDevices utils datasets
[6] methods base

other attached packages:
[1] car_2.1-4 rprojroot_1.3-2 DT_0.2
[4] RMySQL_0.10.9 DBI_0.5-1 bookdown_0.9

loaded via a namespace (and not attached):
[1] Rcpp_0.12.18 rstudioapi_0.6
[3] knitr_1.21 magrittr_1.5
[5] splines_3.4.1 MASS_7.3-47
[7] lattice_0.20-35 minqa_1.2.4
[9] highr_0.6 stringr_1.4.0
[11] tools_3.4.1 parallel_3.4.1
[13] grid_3.4.1 nnet_7.3-12
[15] pbkrtest_0.4-6 nlme_3.1-131
[17] mgcv_1.8-17 xfun_0.4
[19] quantreg_5.34 MatrixModels_0.4-1
[21] htmltools_0.3.6 yaml_2.2.0
[23] lme4_1.1-12 digest_0.6.12
[25] Matrix_1.2-10 nloptr_1.0.4
[27] htmlwidgets_1.3 evaluate_0.10
[29] rmarkdown_1.11 stringi_1.3.1
[31] compiler_3.4.1 backports_1.0.4
[33] SparseM_1.77 jsonlite_1.5

the index.html's head:
<head>

==========================
(2)centOS 7.6

sessionInfo()
R version 3.5.1 (2018-07-02)
Platform: x86_64-redhat-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)

Matrix products: default
BLAS/LAPACK: /usr/lib64/R/lib/libRblas.so

locale:
[1] LC_CTYPE=zh_CN.UTF-8 LC_NUMERIC=C
[3] LC_TIME=zh_CN.UTF-8 LC_COLLATE=zh_CN.UTF-8
[5] LC_MONETARY=zh_CN.UTF-8 LC_MESSAGES=zh_CN.UTF-8
[7] LC_PAPER=zh_CN.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=zh_CN.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] datasets grid graphics grDevices stats utils
[7] methods base

other attached packages:
[1] rprojroot_1.3-2 rmarkdown_1.11.9 knitr_1.21 bookdown_0.9.1
[5] RSQLite_2.1.1 gsubfn_0.6-6 proto_1.0.0 FSA_0.8.17
[9] TH.data_1.0-8 MASS_7.3-50 ggplot2_3.0.0 Formula_1.2-2
[13] survival_2.42-3 lattice_0.20-35 car_3.0-2 carData_3.0-1
[17] DT_0.2 RMySQL_0.10.15 DBI_1.0.0

loaded via a namespace (and not attached):
[1] tidyselect_0.2.5 lme4_1.1-18-1
[3] htmlwidgets_1.3 munsell_0.5.0
[5] CATT_2.0 codetools_0.2-15
[7] chron_2.3-53 miniUI_0.1.1
[9] withr_2.1.2 colorspace_1.3-2
[11] rstudioapi_0.8 CoinMinD_1.1
[13] DescTools_0.99.25 robustbase_0.93-3
[15] pastecs_1.3.21 trend_1.1.1
[17] vcd_1.4-3 VIM_4.7.0
[19] multiCA_1.1 TTR_0.23-4
[21] TeachingDemos_2.10 gvlma_1.0.0.2
[23] mnormt_1.5-5 ordinal_2018.8-25
[25] MCMCpack_1.4-4 bit64_0.9-7
[27] gee_4.13-19 coda_0.19-1
[29] xfun_0.5 R6_2.3.0

the index.html's head:
<head>

pomchip · March 18, 2019, 2:27am

Hi,

We had severe problems with bookdown in our CentOs box due to differences in encoding between the OS package repo where we got R from and our local system. Getting R package from CRAN added to this mess too.

I don't really have a good solution for you but I would suggest that you look into which encoding is used in your OS repo and on your local system...

kakaymi · March 19, 2019, 7:57am

the lang of OS is the same zh_CN.UTF-8.I have no ideal for this question, just use xpath to replace the head content.
but thank you very much!

system · April 9, 2019, 7:57am

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