mstmap.data.frame(geno_trans, pop.type = "RILn", noMap.dist = 15, trace=TRUE)
Inputing this code gives the error:
Error in mstmap.data.frame(geno_trans, pop.type = "RILn", noMap.dist = 15, :
Population type needs to be "BC","DH","ARIL" or "RILn" (see ?mstmap.data.frame)
The genotype file is in the correct format for "RILn" and only "RILn" (contains heterozygotes coded as "X") and there is no visible difference between my input and the input given by the help-page or the error.
Any assistance, or a recommendation of another package to create a linkage map for running a GWAS, is greatly appreciated!