NIfTI Image Viewer
Version: 1.0.0
Author: Rosalina Gramatikov
License: BSD 3-Clause
Overview
The NIfTI Image Viewer is an interactive Shiny application designed for viewing and analyzing medical imaging data in the NIfTI format. This application allows users to upload NIfTI and DICOM files, offers various viewing modes, and provides basic statistical analyses.
Demo app
https://jumperche.shinyapps.io/MRI-Viewer/
Features
Github
Supported Formats:
NIfTI files (.nii, .nii.gz)
DICOM files (packed as .zip)
Viewing Options:
Single slice view
View all slices
Orthographic view
Overlay of two images
Integration with Papaya Viewer
Tools:
Measurement tool for distance measurement within images
Zoom functions (zoom in, zoom out, reset zoom)
Screenshot functionality
Report Generation:
Generate a PDF report of the analysis with password protection
Statistical Analyses:
Histograms
Boxplots
Mean and variance per slice
3D scatter plots
Correlation matrix
Descriptive statistics (including non-zero values)
Nifti data
https://github.com/muschellij2/Neurohacking_data/archive/v0.0.zip