unable to deploy application in shiny apps IO

shiny
,
3

Thanks josh for the quick reply :smiley: ! ,

not solved but closer i guess :stuck_out_tongue:

when upgrading R some package dependencies where not explicitly installed.

the only explicit install i have is:

devtools::install_github("jas1/RBioFabric")
library(RBioFabric)

and looks like ok as said on: 2.4.0.1 Important note on GitHub packages in:
http://docs.rstudio.com/shinyapps.io/getting-started.html#managing-r-versions

the error i got this time: ( just an extract on the last details)

2018-12-17T14:22:07.274165+00:00 shinyapps[600820]: Attaching package: ‘jsonlite’
2018-12-17T14:22:07.274700+00:00 shinyapps[600820]: The following object is masked from ‘package:purrr’:
2018-12-17T14:22:07.274701+00:00 shinyapps[600820]: 
2018-12-17T14:22:07.274702+00:00 shinyapps[600820]:     flatten
2018-12-17T14:22:07.275868+00:00 shinyapps[600820]: 
2018-12-17T14:22:07.478471+00:00 shinyapps[600820]: Downloading GitHub repo jas1/RBioFabric@master
2018-12-17T14:22:07.274702+00:00 shinyapps[600820]: 
2018-12-17T14:22:07.275866+00:00 shinyapps[600820]: The following object is masked from ‘package:shiny’:
2018-12-17T14:22:07.274166+00:00 shinyapps[600820]: 
2018-12-17T14:22:07.275867+00:00 shinyapps[600820]: 
2018-12-17T14:22:07.275867+00:00 shinyapps[600820]:     validate
2018-12-17T14:22:09.945984+00:00 shinyapps[600820]: 
2018-12-17T14:22:10.201043+00:00 shinyapps[600820]:   
   checking for file ‘/tmp/RtmpoqyXRE/remotes13cd56dbf/jas1-RBioFabric-7ad013e/DESCRIPTION’ ...
  
✔  checking for file ‘/tmp/RtmpoqyXRE/remotes13cd56dbf/jas1-RBioFabric-7ad013e/DESCRIPTION’
2018-12-17T14:22:10.227043+00:00 shinyapps[600820]: 
  
─  preparing ‘RBioFabric’:
2018-12-17T14:22:10.232668+00:00 shinyapps[600820]: 
  
   checking DESCRIPTION meta-information ...
  
✔  checking DESCRIPTION meta-information
2018-12-17T14:22:10.263747+00:00 shinyapps[600820]: 
  
─  checking for LF line-endings in source and make files and shell scripts
2018-12-17T14:22:10.267777+00:00 shinyapps[600820]: 
  
─  checking for empty or unneeded directories
2018-12-17T14:22:10.272302+00:00 shinyapps[600820]: 
  
─  building ‘RBioFabric_0.4.tar.gz’
2018-12-17T14:22:10.340283+00:00 shinyapps[600820]: 
  
   
2018-12-17T14:22:10.368726+00:00 shinyapps[600820]:   (convertido del aviso) 'lib = "/opt/R/3.5.1/lib/R/library"' is not writable
2018-12-17T14:22:10.368723+00:00 shinyapps[600820]: 
Error in value[[3L]](cond) : 
2018-12-17T14:22:10.368727+00:00 shinyapps[600820]: Calls: local ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
2018-12-17T14:22:10.368727+00:00 shinyapps[600820]: Ejecución interrumpida

about 2.4 Using your R packages in the cloud:

  • R packages that do not run on Ubuntu Linux : checked, it works on my notebook w/ linux mint
  • R packages that require access to the display (such as Tcl/Tk): is there any quick & friendly way to check all dependency tree ? of an application ?

On the other hand, any good practices to debug this kind of stuff ?

ex: having a visualization of dependency tree for an application?
ex: from an application dependency tree, way to check wich packages are installed explicitly on the local reposiory ?
ex: when upgrading R , and libraries are download again, which are installed and wich not on your local system

Thanks in advance :smiley: !