I have your configuration but didn't experience the same issue. Here's what I did:
- Created a new RMarkdown file with the pdf option
- Knit
- Saw preview
- Changed the chuck with
plot(pressure)
toplot(cars)
- Knit
- Saw preview
Can you try that to eliminate Mojave/RStudio minimal issues and then post of reproducible example, called a reprex of an Rmd file that's giving your the problem?