anova.cca permutation for Vegan missing codes

Hi @Melisska! Welcome!

Welcome! I'm afraid you'll need to supply some more info in order for helpers to be able to understand your problem.

Can you please try to compose a small, self-contained reproducible example that illustrates your problem? (follow that link for instructions and explanations) A reprex makes it much easier for others to understand your issue and figure out how to help.

If you try all that and get stuck, here's a fallback option...
  1. Edit your post and add in the code that causes the problem. Be sure to format your code as code (it's hard to read unformatted code, and it can get garbled by the forum software)
  2. Include sample data:
    • If your data set is OK to share, run the following line and paste the output into your post. Again, be sure to format it as code :sparkles:
    dput(head(your_dataframe_name, 10))
    • If your data set can't be shared, run this line instead and paste the output into your post (and yes, format as code!) This will still share some information about your data. If it's truly confidential, I'm afraid you'll need to make a fake sample dataset to share.